RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 TEX261Q6UWH6 196 aa4.8□□□□□ -1.64
NEK3-201ENST00000550331 GATD1Q8NB37 220 aa4.8□□□□□ -1.64
NEK3-201ENST00000550331 NUDT10Q8NFP7 164 aa4.8□□□□□ -1.64
NEK3-201ENST00000550331 CHCHD10Q8WYQ3 142 aaPredicted RBP4.8□□□□□ -1.64
NEK3-201ENST00000550331 NUDT11Q96G61 164 aa4.8□□□□□ -1.64
NEK3-201ENST00000550331 RPP21Q9H633 154 aaKnown RBP4.8□□□□□ -1.64
NEK3-201ENST00000550331 TRAV26-2A0A0B4J265 109 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 IGKV3OR2-268A0A0C4DH90 116 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 APCSP02743 223 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 FGF6P10767 208 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 ZNF25P17030 456 aaPredicted RBP4.79□□□□□ -1.64
NEK3-201ENST00000550331 PRR3P79522 188 aaKnown RBP4.79□□□□□ -1.64
NEK3-201ENST00000550331 HIGD2BQ4VC39 106 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 Q6ZNX1 250 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 SMIM15Q7Z3B0 74 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 LINC00474Q9P2X8 69 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 PKIGQ9Y2B9 76 aa4.79□□□□□ -1.64
NEK3-201ENST00000550331 IGKV2-24A0A0C4DH68 120 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 FOXI1Q12951 378 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 MAJINQ3KP22 176 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 RNASEKQ6P5S7 137 aaKnown RBP4.78□□□□□ -1.64
NEK3-201ENST00000550331 STPG4Q8N801 248 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 OR5A1Q8NGJ0 315 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 PRSS3P2Q8NHM4 247 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 GTSF1Q8WW33 167 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 RPL39LQ96EH5 51 aaKnown RBP4.78□□□□□ -1.64
NEK3-201ENST00000550331 LINC01600Q96MT4 127 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 FAM210AQ96ND0 272 aa4.78□□□□□ -1.64
NEK3-201ENST00000550331 RNASE7Q9H1E1 156 aaKnown RBP4.78□□□□□ -1.64
NEK3-201ENST00000550331 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.77□□□□□ -1.65
NEK3-201ENST00000550331 TRBV6-5A0A0K0K1A5 114 aa4.77□□□□□ -1.65
NEK3-201ENST00000550331 IGKV2-29A2NJV5 120 aaPredicted RBP4.77□□□□□ -1.65
NEK3-201ENST00000550331 SDHAF1A6NFY7 115 aa4.77□□□□□ -1.65
NEK3-201ENST00000550331 I3L3M4 83 aa4.77□□□□□ -1.65
NEK3-201ENST00000550331 K7EN84 100 aa4.77□□□□□ -1.65
NEK3-201ENST00000550331 SLC51BQ86UW2 128 aa4.77□□□□□ -1.65
NEK3-201ENST00000550331 OCC1Q8TAD7 63 aa4.77□□□□□ -1.65
NEK3-201ENST00000550331 BTF3L4Q96K17 158 aa4.77□□□□□ -1.65
NEK3-201ENST00000550331 A0A096LNI7 61 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 IGHV1-58A0A0C4DH39 117 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 LINC00959A0A1B0GUT2 108 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 FAM231BA6NCW3 169 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 GAS8-AS1O95177 125 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 ESDP10768 282 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 XCL1P47992 114 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 KRTAP15-1Q3LI76 137 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 SPINK6Q6UWN8 80 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 FAM231DQ6ZW35 169 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 MRAP2Q96G30 205 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 TMEM101Q96IK0 257 aa4.76□□□□□ -1.65
NEK3-201ENST00000550331 A0A0J9YXV3 536 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 A8MWL6 223 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 TMEM250H0YL14 139 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 CCL25O15444 150 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 PMCHP20382 165 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 FOXA3P55318 350 aaPredicted RBP4.75□□□□□ -1.65
NEK3-201ENST00000550331 REG3GQ6UW15 175 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 MRPL52Q86TS9 123 aaKnown RBP4.75□□□□□ -1.65
NEK3-201ENST00000550331 TCTE3Q8IZS6 198 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 LYPD6BQ8NI32 183 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 BORCS7Q96B45 105 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 CARD19Q96LW7 228 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 ST20Q9HBF5 79 aa4.75□□□□□ -1.65
NEK3-201ENST00000550331 LPAP08519 4548 aa4.74□□□□□ -1.65
NEK3-201ENST00000550331 FAT4Q6V0I7 4981 aa4.74□□□□□ -1.65
NEK3-201ENST00000550331 GATCO43716 136 aaKnown RBP4.74□□□□□ -1.65
NEK3-201ENST00000550331 TSHBP01222 138 aa4.74□□□□□ -1.65
NEK3-201ENST00000550331 SYCNQ0VAF6 134 aa4.74□□□□□ -1.65
NEK3-201ENST00000550331 SS18Q15532 418 aa4.74□□□□□ -1.65
NEK3-201ENST00000550331 CD164L2Q6UWJ8 174 aa4.74□□□□□ -1.65
NEK3-201ENST00000550331 Q6ZRP5 223 aa4.74□□□□□ -1.65
NEK3-201ENST00000550331 CDC42SE2Q9NRR3 84 aa4.74□□□□□ -1.65
NEK3-201ENST00000550331 TRBV27A0A0K0K1C4 114 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 C7orf77A4D0Y5 90 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 CAMPP49913 170 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 POLR2KP53803 58 aaKnown RBP4.73□□□□□ -1.65
NEK3-201ENST00000550331 KRTAP10-8P60410 259 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 SRSF9Q13242 221 aaKnown RBP eCLIP4.73□□□□□ -1.65
NEK3-201ENST00000550331 ZNF664Q8N3J9 261 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 ISOC2Q96AB3 205 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 LINC00526Q96FQ7 95 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 TMEM191AQ9H0A3 160 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 TMEM242Q9NWH2 141 aa4.73□□□□□ -1.65
NEK3-201ENST00000550331 LOC107984640A0A0U1RRK4 108 aa4.72□□□□□ -1.65
NEK3-201ENST00000550331 A0A1B0GUT8 65 aa4.72□□□□□ -1.65
NEK3-201ENST00000550331 HIGD1CA8MV81 97 aa4.72□□□□□ -1.65
NEK3-201ENST00000550331 MALP21145 153 aa4.72□□□□□ -1.65
NEK3-201ENST00000550331 PTTG1IPP53801 180 aa4.72□□□□□ -1.65
NEK3-201ENST00000550331 SMAGPQ0VAQ4 97 aa4.72□□□□□ -1.65
NEK3-201ENST00000550331 TSKUQ8WUA8 353 aa4.72□□□□□ -1.65
NEK3-201ENST00000550331 CSDC2Q9Y534 153 aaKnown RBP4.72□□□□□ -1.65
NEK3-201ENST00000550331 IGLV4-69A0A075B6H9 119 aa4.71□□□□□ -1.66
NEK3-201ENST00000550331 C1orf196B1AJZ1 125 aa4.71□□□□□ -1.66
NEK3-201ENST00000550331 COX7A2LO14548 114 aa4.71□□□□□ -1.66
NEK3-201ENST00000550331 VCYO14598 125 aa4.71□□□□□ -1.66
NEK3-201ENST00000550331 TNFRSF6BO95407 300 aa4.71□□□□□ -1.66
NEK3-201ENST00000550331 SCGB1D1O95968 90 aa4.71□□□□□ -1.66
NEK3-201ENST00000550331 PPP1R17O96001 155 aa4.71□□□□□ -1.66
NEK3-201ENST00000550331 RAB4AP20338 218 aa4.71□□□□□ -1.66
NEK3-201ENST00000550331 BLOC1S1P78537 153 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms