RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 FAM74A3Q4VXF1 159 aa10.41□□□□□ -0.74
VPS29-207ENST00000549970 A0A087WYN8 130 aa10.4□□□□□ -0.74
VPS29-207ENST00000549970 TRBV27A0A0K0K1C4 114 aa10.4□□□□□ -0.74
VPS29-207ENST00000549970 C9JQL5 133 aa10.4□□□□□ -0.74
VPS29-207ENST00000549970 FOXI1Q12951 378 aa10.4□□□□□ -0.74
VPS29-207ENST00000549970 LINC00959A0A1B0GUT2 108 aa10.39□□□□□ -0.75
VPS29-207ENST00000549970 C7orf77A4D0Y5 90 aa10.39□□□□□ -0.75
VPS29-207ENST00000549970 CCL25O15444 150 aa10.39□□□□□ -0.75
VPS29-207ENST00000549970 COX6A2Q02221 97 aa10.39□□□□□ -0.75
VPS29-207ENST00000549970 SPACA4Q8TDM5 124 aa10.39□□□□□ -0.75
VPS29-207ENST00000549970 NAT8Q9UHE5 227 aa10.39□□□□□ -0.75
VPS29-207ENST00000549970 NAT8BQ9UHF3 227 aa10.39□□□□□ -0.75
VPS29-207ENST00000549970 GVQW2A0A096LPI5 108 aaPredicted RBP10.38□□□□□ -0.75
VPS29-207ENST00000549970 OXTP01178 125 aa10.38□□□□□ -0.75
VPS29-207ENST00000549970 SRSF3P84103 164 aaKnown RBP10.38□□□□□ -0.75
VPS29-207ENST00000549970 VCYO14598 125 aa10.37□□□□□ -0.75
VPS29-207ENST00000549970 FCER1GP30273 86 aa10.37□□□□□ -0.75
VPS29-207ENST00000549970 MRPL52Q86TS9 123 aaKnown RBP10.37□□□□□ -0.75
VPS29-207ENST00000549970 NRACQ8N912 160 aa10.37□□□□□ -0.75
VPS29-207ENST00000549970 PRSS3P2Q8NHM4 247 aa10.37□□□□□ -0.75
VPS29-207ENST00000549970 CDC42SE2Q9NRR3 84 aa10.37□□□□□ -0.75
VPS29-207ENST00000549970 IGKV2-24A0A0C4DH68 120 aa10.36□□□□□ -0.75
VPS29-207ENST00000549970 CAMPP49913 170 aa10.36□□□□□ -0.75
VPS29-207ENST00000549970 SUMO2P61956 95 aaKnown RBP10.36□□□□□ -0.75
VPS29-207ENST00000549970 PEA15Q15121 130 aa10.36□□□□□ -0.75
VPS29-207ENST00000549970 SS18Q15532 418 aa10.36□□□□□ -0.75
VPS29-207ENST00000549970 SMIM27A0A1W2PRY6 76 aa10.35□□□□□ -0.75
VPS29-207ENST00000549970 PPP1R17O96001 155 aa10.35□□□□□ -0.75
VPS29-207ENST00000549970 MAJINQ3KP22 176 aa10.35□□□□□ -0.75
VPS29-207ENST00000549970 MRPL51Q4U2R6 128 aaKnown RBP10.35□□□□□ -0.75
VPS29-207ENST00000549970 FAM104BQ5XKR9 115 aa10.35□□□□□ -0.75
VPS29-207ENST00000549970 ZNF664Q8N3J9 261 aa10.35□□□□□ -0.75
VPS29-207ENST00000549970 LINC00526Q96FQ7 95 aa10.35□□□□□ -0.75
VPS29-207ENST00000549970 IGHV1-58A0A0C4DH39 117 aa10.34□□□□□ -0.75
VPS29-207ENST00000549970 KIR2DL4Q99706 377 aa10.34□□□□□ -0.75
VPS29-207ENST00000549970 PLAC8Q9NZF1 115 aa10.34□□□□□ -0.75
VPS29-207ENST00000549970 PPP1R2P9O14990 202 aa10.33□□□□□ -0.76
VPS29-207ENST00000549970 RNASE13Q5GAN3 156 aaKnown RBP10.33□□□□□ -0.76
VPS29-207ENST00000549970 CD164L2Q6UWJ8 174 aa10.33□□□□□ -0.76
VPS29-207ENST00000549970 HMCN2Q8NDA2 5059 aa10.33□□□□□ -0.76
VPS29-207ENST00000549970 SMDT1Q9H4I9 107 aa10.32□□□□□ -0.76
VPS29-207ENST00000549970 UBE2D4Q9Y2X8 147 aa10.32□□□□□ -0.76
VPS29-207ENST00000549970 A0A096LNI7 61 aa10.31□□□□□ -0.76
VPS29-207ENST00000549970 PHOX2AO14813 284 aa10.31□□□□□ -0.76
VPS29-207ENST00000549970 CKS2P33552 79 aa10.31□□□□□ -0.76
VPS29-207ENST00000549970 SMAGPQ0VAQ4 97 aa10.31□□□□□ -0.76
VPS29-207ENST00000549970 MRPL54Q6P161 138 aaKnown RBP10.31□□□□□ -0.76
VPS29-207ENST00000549970 C7orf33Q8WU49 177 aa10.31□□□□□ -0.76
VPS29-207ENST00000549970 CARD19Q96LW7 228 aa10.31□□□□□ -0.76
VPS29-207ENST00000549970 A0A1B0GW15 77 aa10.3□□□□□ -0.76
VPS29-207ENST00000549970 LINC00862A6NCI5 91 aa10.3□□□□□ -0.76
VPS29-207ENST00000549970 ZNF561-AS1K7EIQ3 104 aa10.3□□□□□ -0.76
VPS29-207ENST00000549970 STPG4Q8N801 248 aa10.3□□□□□ -0.76
VPS29-207ENST00000549970 CSDC2Q9Y534 153 aaKnown RBP10.3□□□□□ -0.76
VPS29-207ENST00000549970 TRAV13-1A0A0B4J241 112 aa10.29□□□□□ -0.76
VPS29-207ENST00000549970 C1orf196B1AJZ1 125 aa10.29□□□□□ -0.76
VPS29-207ENST00000549970 MALP21145 153 aa10.29□□□□□ -0.76
VPS29-207ENST00000549970 HBBP68871 147 aa10.29□□□□□ -0.76
VPS29-207ENST00000549970 SERTAD4-AS1Q5TG53 156 aa10.29□□□□□ -0.76
VPS29-207ENST00000549970 Q6ZUT4 128 aa10.29□□□□□ -0.76
VPS29-207ENST00000549970 C20orf78Q9BR46 151 aa10.29□□□□□ -0.76
VPS29-207ENST00000549970 TRBV24-1A0A075B6N3 115 aa10.28□□□□□ -0.76
VPS29-207ENST00000549970 D6R8Y8 96 aa10.28□□□□□ -0.76
VPS29-207ENST00000549970 COX7A2LO14548 114 aa10.28□□□□□ -0.76
VPS29-207ENST00000549970 TNFRSF6BO95407 300 aa10.28□□□□□ -0.76
VPS29-207ENST00000549970 SYCNQ0VAF6 134 aa10.28□□□□□ -0.76
VPS29-207ENST00000549970 Q6ZRU5 148 aa10.28□□□□□ -0.76
VPS29-207ENST00000549970 TMEM18Q96B42 140 aa10.28□□□□□ -0.76
VPS29-207ENST00000549970 F8W036 122 aa10.27□□□□□ -0.77
VPS29-207ENST00000549970 S100A8P05109 93 aa10.27□□□□□ -0.77
VPS29-207ENST00000549970 PKIGQ9Y2B9 76 aa10.27□□□□□ -0.77
VPS29-207ENST00000549970 IGLV4-69A0A075B6H9 119 aa10.26□□□□□ -0.77
VPS29-207ENST00000549970 A0A1B0GXF2 115 aa10.26□□□□□ -0.77
VPS29-207ENST00000549970 RPL39P62891 51 aaKnown RBP10.26□□□□□ -0.77
VPS29-207ENST00000549970 RPL32P62910 135 aaKnown RBP10.26□□□□□ -0.77
VPS29-207ENST00000549970 TIMM21Q9BVV7 248 aa10.26□□□□□ -0.77
VPS29-207ENST00000549970 SMIM2Q9BVW6 85 aa10.26□□□□□ -0.77
VPS29-207ENST00000549970 LINC00474Q9P2X8 69 aa10.26□□□□□ -0.77
VPS29-207ENST00000549970 TNXBP22105 4242 aa10.25□□□□□ -0.77
VPS29-207ENST00000549970 TCAPO15273 167 aa10.25□□□□□ -0.77
VPS29-207ENST00000549970 NPYP01303 97 aa10.25□□□□□ -0.77
VPS29-207ENST00000549970 LCE2DQ5TA82 110 aaPredicted RBP10.25□□□□□ -0.77
VPS29-207ENST00000549970 C5orf38Q86SI9 138 aa10.25□□□□□ -0.77
VPS29-207ENST00000549970 PRR3P79522 188 aaKnown RBP10.23□□□□□ -0.77
VPS29-207ENST00000549970 CAMK2N2Q96S95 79 aa10.23□□□□□ -0.77
VPS29-207ENST00000549970 PPBPP02775 128 aa10.22□□□□□ -0.77
VPS29-207ENST00000549970 MT1HL1P0DM35 61 aa10.22□□□□□ -0.77
VPS29-207ENST00000549970 GAGE2BQ13066 116 aa10.22□□□□□ -0.77
VPS29-207ENST00000549970 OPRPNQ99935 248 aaPredicted RBP10.22□□□□□ -0.77
VPS29-207ENST00000549970 SPANXA1Q9NS26 97 aa10.22□□□□□ -0.77
VPS29-207ENST00000549970 LOC107984640A0A0U1RRK4 108 aa10.21□□□□□ -0.77
VPS29-207ENST00000549970 APOMO95445 188 aa10.21□□□□□ -0.77
VPS29-207ENST00000549970 PTTG1IPP53801 180 aa10.21□□□□□ -0.77
VPS29-207ENST00000549970 SPAG11BQ08648 103 aa10.21□□□□□ -0.77
VPS29-207ENST00000549970 ATP5L2Q7Z4Y8 100 aa10.21□□□□□ -0.77
VPS29-207ENST00000549970 ORMDL3Q8N138 153 aa10.21□□□□□ -0.77
VPS29-207ENST00000549970 FAM104AQ969W3 186 aa10.21□□□□□ -0.77
VPS29-207ENST00000549970 PLA2G2DQ9UNK4 145 aa10.21□□□□□ -0.77
VPS29-207ENST00000549970 TMEM136Q6ZRR5 245 aa10.2□□□□□ -0.78
VPS29-207ENST00000549970 C2orf48Q96LS8 159 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms