RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 GAGE12HA6NDE8 117 aa7.17□□□□□ -1.26
VPS28-214ENST00000531032 I3L3M4 83 aa7.17□□□□□ -1.26
VPS28-214ENST00000531032 NUP35Q8NFH5 326 aa7.17□□□□□ -1.26
VPS28-214ENST00000531032 TMEM101Q96IK0 257 aa7.17□□□□□ -1.26
VPS28-214ENST00000531032 SMDT1Q9H4I9 107 aa7.17□□□□□ -1.26
VPS28-214ENST00000531032 TMEM242Q9NWH2 141 aa7.17□□□□□ -1.26
VPS28-214ENST00000531032 TRBV6-5A0A0K0K1A5 114 aa7.16□□□□□ -1.26
VPS28-214ENST00000531032 H7C423 109 aa7.16□□□□□ -1.26
VPS28-214ENST00000531032 PHOX2AO14813 284 aa7.16□□□□□ -1.26
VPS28-214ENST00000531032 FGF6P10767 208 aa7.16□□□□□ -1.26
VPS28-214ENST00000531032 RPS10P46783 165 aaKnown RBP7.16□□□□□ -1.26
VPS28-214ENST00000531032 COX6A2Q02221 97 aa7.16□□□□□ -1.26
VPS28-214ENST00000531032 C7orf33Q8WU49 177 aa7.16□□□□□ -1.26
VPS28-214ENST00000531032 GVQW2A0A096LPI5 108 aaPredicted RBP7.15□□□□□ -1.26
VPS28-214ENST00000531032 PPP1R17O96001 155 aa7.15□□□□□ -1.26
VPS28-214ENST00000531032 ZNF25P17030 456 aaPredicted RBP7.15□□□□□ -1.26
VPS28-214ENST00000531032 RAB4AP20338 218 aa7.15□□□□□ -1.26
VPS28-214ENST00000531032 FCER1GP30273 86 aa7.15□□□□□ -1.26
VPS28-214ENST00000531032 HIGD2BQ4VC39 106 aa7.15□□□□□ -1.26
VPS28-214ENST00000531032 OR5A1Q8NGJ0 315 aa7.15□□□□□ -1.26
VPS28-214ENST00000531032 CHCHD10Q8WYQ3 142 aaPredicted RBP7.15□□□□□ -1.26
VPS28-214ENST00000531032 A0A1B0GW15 77 aa7.14□□□□□ -1.27
VPS28-214ENST00000531032 C7orf77A4D0Y5 90 aa7.14□□□□□ -1.27
VPS28-214ENST00000531032 LINC00862A6NCI5 91 aa7.14□□□□□ -1.27
VPS28-214ENST00000531032 SMKR1H3BMG3 65 aa7.14□□□□□ -1.27
VPS28-214ENST00000531032 S100A8P05109 93 aa7.14□□□□□ -1.27
VPS28-214ENST00000531032 CAMPP49913 170 aa7.14□□□□□ -1.27
VPS28-214ENST00000531032 FOXI1Q12951 378 aa7.14□□□□□ -1.27
VPS28-214ENST00000531032 PRSS3P2Q8NHM4 247 aa7.14□□□□□ -1.27
VPS28-214ENST00000531032 SMIM27A0A1W2PRY6 76 aa7.13□□□□□ -1.27
VPS28-214ENST00000531032 PPP1R2P9O14990 202 aa7.13□□□□□ -1.27
VPS28-214ENST00000531032 GAS8-AS1O95177 125 aa7.13□□□□□ -1.27
VPS28-214ENST00000531032 TSHBP01222 138 aa7.13□□□□□ -1.27
VPS28-214ENST00000531032 PRR3P79522 188 aaKnown RBP7.13□□□□□ -1.27
VPS28-214ENST00000531032 SMAGPQ0VAQ4 97 aa7.13□□□□□ -1.27
VPS28-214ENST00000531032 MAJINQ3KP22 176 aa7.13□□□□□ -1.27
VPS28-214ENST00000531032 MRPL54Q6P161 138 aaKnown RBP7.13□□□□□ -1.27
VPS28-214ENST00000531032 KIR2DL4Q99706 377 aa7.13□□□□□ -1.27
VPS28-214ENST00000531032 IGKV2-24A0A0C4DH68 120 aa7.12□□□□□ -1.27
VPS28-214ENST00000531032 F8W036 122 aa7.12□□□□□ -1.27
VPS28-214ENST00000531032 VCYO14598 125 aa7.12□□□□□ -1.27
VPS28-214ENST00000531032 SUMO2P61956 95 aaKnown RBP7.12□□□□□ -1.27
VPS28-214ENST00000531032 HBBP68871 147 aa7.12□□□□□ -1.27
VPS28-214ENST00000531032 COMMD7Q86VX2 200 aa7.12□□□□□ -1.27
VPS28-214ENST00000531032 A0A096LNI7 61 aa7.11□□□□□ -1.27
VPS28-214ENST00000531032 TRBV27A0A0K0K1C4 114 aa7.11□□□□□ -1.27
VPS28-214ENST00000531032 ADCYAP1P18509 176 aa7.11□□□□□ -1.27
VPS28-214ENST00000531032 CKS2P33552 79 aa7.11□□□□□ -1.27
VPS28-214ENST00000531032 POLR2KP53803 58 aaKnown RBP7.11□□□□□ -1.27
VPS28-214ENST00000531032 MRPL51Q4U2R6 128 aaKnown RBP7.11□□□□□ -1.27
VPS28-214ENST00000531032 FAM104BQ5XKR9 115 aa7.11□□□□□ -1.27
VPS28-214ENST00000531032 STPG4Q8N801 248 aa7.11□□□□□ -1.27
VPS28-214ENST00000531032 LINC01600Q96MT4 127 aa7.11□□□□□ -1.27
VPS28-214ENST00000531032 LINC00959A0A1B0GUT2 108 aa7.1□□□□□ -1.27
VPS28-214ENST00000531032 ESDP10768 282 aa7.1□□□□□ -1.27
VPS28-214ENST00000531032 XCL1P47992 114 aa7.1□□□□□ -1.27
VPS28-214ENST00000531032 SS18Q15532 418 aa7.1□□□□□ -1.27
VPS28-214ENST00000531032 TMEM18Q96B42 140 aa7.1□□□□□ -1.27
VPS28-214ENST00000531032 LINC00474Q9P2X8 69 aa7.1□□□□□ -1.27
VPS28-214ENST00000531032 IGHV1-58A0A0C4DH39 117 aa7.09□□□□□ -1.27
VPS28-214ENST00000531032 TMEM218A2RU14 115 aa7.09□□□□□ -1.27
VPS28-214ENST00000531032 CCL25O15444 150 aa7.09□□□□□ -1.27
VPS28-214ENST00000531032 PNRC1Q12796 327 aaPredicted RBP7.09□□□□□ -1.27
VPS28-214ENST00000531032 MRPL52Q86TS9 123 aaKnown RBP7.09□□□□□ -1.27
VPS28-214ENST00000531032 NRACQ8N912 160 aa7.09□□□□□ -1.27
VPS28-214ENST00000531032 PKIGQ9Y2B9 76 aa7.09□□□□□ -1.27
VPS28-214ENST00000531032 TNXBP22105 4242 aa7.09□□□□□ -1.27
VPS28-214ENST00000531032 D6R8Y8 96 aa7.08□□□□□ -1.28
VPS28-214ENST00000531032 TCAPO15273 167 aa7.08□□□□□ -1.28
VPS28-214ENST00000531032 UQCC3Q6UW78 93 aa7.08□□□□□ -1.28
VPS28-214ENST00000531032 ATP5L2Q7Z4Y8 100 aa7.08□□□□□ -1.28
VPS28-214ENST00000531032 CARD19Q96LW7 228 aa7.08□□□□□ -1.28
VPS28-214ENST00000531032 C20orf78Q9BR46 151 aa7.08□□□□□ -1.28
VPS28-214ENST00000531032 LRP2P98164 4655 aa7.07□□□□□ -1.28
VPS28-214ENST00000531032 TNFRSF6BO95407 300 aa7.07□□□□□ -1.28
VPS28-214ENST00000531032 MT-ND4LP03901 98 aa7.07□□□□□ -1.28
VPS28-214ENST00000531032 CD164L2Q6UWJ8 174 aa7.07□□□□□ -1.28
VPS28-214ENST00000531032 ZNF664Q8N3J9 261 aa7.07□□□□□ -1.28
VPS28-214ENST00000531032 LINC00526Q96FQ7 95 aa7.07□□□□□ -1.28
VPS28-214ENST00000531032 SMIM2Q9BVW6 85 aa7.07□□□□□ -1.28
VPS28-214ENST00000531032 CDC42SE2Q9NRR3 84 aa7.07□□□□□ -1.28
VPS28-214ENST00000531032 A0A0J9YXV3 536 aa7.06□□□□□ -1.28
VPS28-214ENST00000531032 A0A1B0GXF2 115 aa7.06□□□□□ -1.28
VPS28-214ENST00000531032 PPBPP02775 128 aa7.06□□□□□ -1.28
VPS28-214ENST00000531032 SPINK6Q6UWN8 80 aa7.06□□□□□ -1.28
VPS28-214ENST00000531032 SLC7A5P1Q8MH63 180 aa7.06□□□□□ -1.28
VPS28-214ENST00000531032 ORMDL3Q8N138 153 aa7.06□□□□□ -1.28
VPS28-214ENST00000531032 TRAV13-1A0A0B4J241 112 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 ZNF561-AS1K7EIQ3 104 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 NPYP01303 97 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 MALP21145 153 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 RPL32P62910 135 aaKnown RBP7.05□□□□□ -1.28
VPS28-214ENST00000531032 SYCNQ0VAF6 134 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 RNASE13Q5GAN3 156 aaKnown RBP7.05□□□□□ -1.28
VPS28-214ENST00000531032 C10orf91Q5T1B1 145 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 Q6ZUT4 128 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 ANAPC16Q96DE5 110 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 UBE2D4Q9Y2X8 147 aa7.05□□□□□ -1.28
VPS28-214ENST00000531032 TRBV24-1A0A075B6N3 115 aa7.04□□□□□ -1.28
VPS28-214ENST00000531032 C1orf196B1AJZ1 125 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms