RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 TSHBP01222 138 aa14.54□□□□□ -0.08
CPSF1-202ENST00000527827 PTTG1IPP53801 180 aa14.53□□□□□ -0.08
CPSF1-202ENST00000527827 CD164L2Q6UWJ8 174 aa14.53□□□□□ -0.08
CPSF1-202ENST00000527827 ZNF561-AS1K7EIQ3 104 aa14.52□□□□□ -0.09
CPSF1-202ENST00000527827 SS18Q15532 418 aa14.52□□□□□ -0.09
CPSF1-202ENST00000527827 CDC42SE2Q9NRR3 84 aa14.52□□□□□ -0.09
CPSF1-202ENST00000527827 TMEM242Q9NWH2 141 aa14.52□□□□□ -0.09
CPSF1-202ENST00000527827 CAMPP49913 170 aa14.5□□□□□ -0.09
CPSF1-202ENST00000527827 MRPL52Q86TS9 123 aaKnown RBP14.5□□□□□ -0.09
CPSF1-202ENST00000527827 MRAP2Q96G30 205 aa14.5□□□□□ -0.09
CPSF1-202ENST00000527827 TAGLN2P37802 199 aaKnown RBP14.49□□□□□ -0.09
CPSF1-202ENST00000527827 GAGE2BQ13066 116 aa14.49□□□□□ -0.09
CPSF1-202ENST00000527827 ST20Q9HBF5 79 aa14.49□□□□□ -0.09
CPSF1-202ENST00000527827 LOC107984640A0A0U1RRK4 108 aa14.48□□□□□ -0.09
CPSF1-202ENST00000527827 A0A1W2PNN7 141 aa14.48□□□□□ -0.09
CPSF1-202ENST00000527827 GATCO43716 136 aaKnown RBP14.48□□□□□ -0.09
CPSF1-202ENST00000527827 ZNF664Q8N3J9 261 aa14.48□□□□□ -0.09
CPSF1-202ENST00000527827 IGLV4-69A0A075B6H9 119 aa14.47□□□□□ -0.09
CPSF1-202ENST00000527827 POLR2KP53803 58 aaKnown RBP14.47□□□□□ -0.09
CPSF1-202ENST00000527827 FAM210AQ96ND0 272 aa14.47□□□□□ -0.09
CPSF1-202ENST00000527827 A8MWL6 223 aa14.46□□□□□ -0.09
CPSF1-202ENST00000527827 FAM231DQ6ZW35 169 aa14.46□□□□□ -0.09
CPSF1-202ENST00000527827 TRBV27A0A0K0K1C4 114 aa14.45□□□□□ -0.1
CPSF1-202ENST00000527827 NUP35Q8NFH5 326 aa14.45□□□□□ -0.1
CPSF1-202ENST00000527827 ISOC2Q96AB3 205 aa14.45□□□□□ -0.1
CPSF1-202ENST00000527827 PSORS1C2Q9UIG4 136 aa14.45□□□□□ -0.1
CPSF1-202ENST00000527827 LPAP08519 4548 aa14.44□□□□□ -0.1
CPSF1-202ENST00000527827 C7orf77A4D0Y5 90 aa14.43□□□□□ -0.1
CPSF1-202ENST00000527827 MALP21145 153 aa14.42□□□□□ -0.1
CPSF1-202ENST00000527827 CT83Q5H943 113 aa14.42□□□□□ -0.1
CPSF1-202ENST00000527827 SLC51BQ86UW2 128 aa14.42□□□□□ -0.1
CPSF1-202ENST00000527827 TMEM191AQ9H0A3 160 aa14.42□□□□□ -0.1
CPSF1-202ENST00000527827 C1orf196B1AJZ1 125 aa14.41□□□□□ -0.1
CPSF1-202ENST00000527827 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-202ENST00000527827 COX7A2LO14548 114 aa14.41□□□□□ -0.1
CPSF1-202ENST00000527827 APOMO95445 188 aa14.41□□□□□ -0.1
CPSF1-202ENST00000527827 RAB4AP20338 218 aa14.41□□□□□ -0.1
CPSF1-202ENST00000527827 C9orf116Q5BN46 136 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-202ENST00000527827 CAMK2N2Q96S95 79 aa14.41□□□□□ -0.1
CPSF1-202ENST00000527827 TMEM250H0YL14 139 aa14.4□□□□□ -0.1
CPSF1-202ENST00000527827 MT-ND6P03923 174 aa14.4□□□□□ -0.1
CPSF1-202ENST00000527827 A0A1B0GUT8 65 aa14.39□□□□□ -0.11
CPSF1-202ENST00000527827 BORCS7Q96B45 105 aa14.39□□□□□ -0.11
CPSF1-202ENST00000527827 C2orf48Q96LS8 159 aa14.39□□□□□ -0.11
CPSF1-202ENST00000527827 CSDC2Q9Y534 153 aaKnown RBP14.39□□□□□ -0.11
CPSF1-202ENST00000527827 RNASE13Q5GAN3 156 aaKnown RBP14.38□□□□□ -0.11
CPSF1-202ENST00000527827 PHF5AQ7RTV0 110 aaKnown RBP14.38□□□□□ -0.11
CPSF1-202ENST00000527827 AMN1Q8IY45 258 aa14.38□□□□□ -0.11
CPSF1-202ENST00000527827 UBE2D4Q9Y2X8 147 aa14.38□□□□□ -0.11
CPSF1-202ENST00000527827 HIGD1CA8MV81 97 aa14.37□□□□□ -0.11
CPSF1-202ENST00000527827 SMKR1H3BMG3 65 aa14.36□□□□□ -0.11
CPSF1-202ENST00000527827 VCYO14598 125 aa14.36□□□□□ -0.11
CPSF1-202ENST00000527827 RPL18AQ02543 176 aaKnown RBP14.36□□□□□ -0.11
CPSF1-202ENST00000527827 C1orf137Q5JT78 98 aa14.36□□□□□ -0.11
CPSF1-202ENST00000527827 C5orf38Q86SI9 138 aa14.36□□□□□ -0.11
CPSF1-202ENST00000527827 TSKUQ8WUA8 353 aa14.36□□□□□ -0.11
CPSF1-202ENST00000527827 TRAV13-1A0A0B4J241 112 aa14.35□□□□□ -0.11
CPSF1-202ENST00000527827 FCER1GP30273 86 aa14.35□□□□□ -0.11
CPSF1-202ENST00000527827 OPRPNQ99935 248 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-202ENST00000527827 TCTE3Q8IZS6 198 aa14.34□□□□□ -0.11
CPSF1-202ENST00000527827 NRACQ8N912 160 aa14.34□□□□□ -0.11
CPSF1-202ENST00000527827 CEBPGP53567 150 aa14.33□□□□□ -0.12
CPSF1-202ENST00000527827 SPAG11BQ08648 103 aa14.33□□□□□ -0.12
CPSF1-202ENST00000527827 Q6ZUT4 128 aa14.33□□□□□ -0.12
CPSF1-202ENST00000527827 RNF151Q2KHN1 245 aa14.32□□□□□ -0.12
CPSF1-202ENST00000527827 PRR26Q8N8Z3 221 aa14.32□□□□□ -0.12
CPSF1-202ENST00000527827 SUMO2P61956 95 aaKnown RBP14.31□□□□□ -0.12
CPSF1-202ENST00000527827 SMAGPQ0VAQ4 97 aa14.31□□□□□ -0.12
CPSF1-202ENST00000527827 LINC01551Q86U37 167 aa14.31□□□□□ -0.12
CPSF1-202ENST00000527827 IGLV7-43P04211 117 aa14.3□□□□□ -0.12
CPSF1-202ENST00000527827 KRTAP11-1Q8IUC1 163 aa14.29□□□□□ -0.12
CPSF1-202ENST00000527827 DIRC1Q969H9 104 aa14.29□□□□□ -0.12
CPSF1-202ENST00000527827 KIR2DL4Q99706 377 aa14.29□□□□□ -0.12
CPSF1-202ENST00000527827 TIMM21Q9BVV7 248 aa14.29□□□□□ -0.12
CPSF1-202ENST00000527827 OSTCQ9NRP0 149 aa14.29□□□□□ -0.12
CPSF1-202ENST00000527827 PPP1R17O96001 155 aa14.28□□□□□ -0.12
CPSF1-202ENST00000527827 BLOC1S1P78537 153 aa14.28□□□□□ -0.12
CPSF1-202ENST00000527827 OR10D4PQ8NGN7 298 aa14.28□□□□□ -0.12
CPSF1-202ENST00000527827 SMIM7Q9BQ49 75 aa14.28□□□□□ -0.12
CPSF1-202ENST00000527827 RIGQ13278 110 aa14.27□□□□□ -0.13
CPSF1-202ENST00000527827 MRPL35Q9NZE8 188 aaKnown RBP14.27□□□□□ -0.13
CPSF1-202ENST00000527827 FAM168BA1KXE4 195 aa14.26□□□□□ -0.13
CPSF1-202ENST00000527827 ALKAL2Q6UX46 152 aa14.26□□□□□ -0.13
CPSF1-202ENST00000527827 FAM104AQ969W3 186 aa14.26□□□□□ -0.13
CPSF1-202ENST00000527827 V9GYV3 84 aa14.26□□□□□ -0.13
CPSF1-202ENST00000527827 H0Y9J4 135 aa14.25□□□□□ -0.13
CPSF1-202ENST00000527827 ORAOV1Q8WV07 137 aa14.25□□□□□ -0.13
CPSF1-202ENST00000527827 A0A087WZ39 114 aa14.24□□□□□ -0.13
CPSF1-202ENST00000527827 PPP1R2P9O14990 202 aa14.24□□□□□ -0.13
CPSF1-202ENST00000527827 C10orf25Q5T742 122 aa14.24□□□□□ -0.13
CPSF1-202ENST00000527827 TMEM18Q96B42 140 aa14.24□□□□□ -0.13
CPSF1-202ENST00000527827 IGHV3OR16-9A0A0B4J2B5 98 aa14.23□□□□□ -0.13
CPSF1-202ENST00000527827 F8WDY8 70 aa14.23□□□□□ -0.13
CPSF1-202ENST00000527827 MRPL51Q4U2R6 128 aaKnown RBP14.23□□□□□ -0.13
CPSF1-202ENST00000527827 IMMP2LQ96T52 175 aa14.23□□□□□ -0.13
CPSF1-202ENST00000527827 ZNF727A8MUV8 499 aa14.22□□□□□ -0.13
CPSF1-202ENST00000527827 RPL39P62891 51 aaKnown RBP14.22□□□□□ -0.13
CPSF1-202ENST00000527827 FAM104BQ5XKR9 115 aa14.22□□□□□ -0.13
CPSF1-202ENST00000527827 NDUFA1O15239 70 aa14.21□□□□□ -0.13
CPSF1-202ENST00000527827 TLX1NBP0CAT3 122 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms