RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 TMEM101Q96IK0 257 aa10.8□□□□□ -0.68
COL9A1-210ENST00000493682 BTF3L4Q96K17 158 aa10.8□□□□□ -0.68
COL9A1-210ENST00000493682 CARD19Q96LW7 228 aa10.8□□□□□ -0.68
COL9A1-210ENST00000493682 PKIGQ9Y2B9 76 aa10.8□□□□□ -0.68
COL9A1-210ENST00000493682 PMCHP20382 165 aa10.79□□□□□ -0.68
COL9A1-210ENST00000493682 SRSF9Q13242 221 aaKnown RBP eCLIP10.79□□□□□ -0.68
COL9A1-210ENST00000493682 TRBV6-5A0A0K0K1A5 114 aa10.78□□□□□ -0.68
COL9A1-210ENST00000493682 ESDP10768 282 aa10.78□□□□□ -0.68
COL9A1-210ENST00000493682 TAGLN2P37802 199 aaKnown RBP10.78□□□□□ -0.68
COL9A1-210ENST00000493682 GAS8-AS1O95177 125 aa10.77□□□□□ -0.69
COL9A1-210ENST00000493682 TSHBP01222 138 aa10.77□□□□□ -0.69
COL9A1-210ENST00000493682 Q6ZRP5 223 aa10.77□□□□□ -0.69
COL9A1-210ENST00000493682 SYCNQ0VAF6 134 aa10.76□□□□□ -0.69
COL9A1-210ENST00000493682 ZNF561-AS1K7EIQ3 104 aa10.75□□□□□ -0.69
COL9A1-210ENST00000493682 GATCO43716 136 aaKnown RBP10.75□□□□□ -0.69
COL9A1-210ENST00000493682 SS18Q15532 418 aa10.75□□□□□ -0.69
COL9A1-210ENST00000493682 CD164L2Q6UWJ8 174 aa10.75□□□□□ -0.69
COL9A1-210ENST00000493682 MRAP2Q96G30 205 aa10.75□□□□□ -0.69
COL9A1-210ENST00000493682 ST20Q9HBF5 79 aa10.75□□□□□ -0.69
COL9A1-210ENST00000493682 CDC42SE2Q9NRR3 84 aa10.75□□□□□ -0.69
COL9A1-210ENST00000493682 TMEM242Q9NWH2 141 aa10.75□□□□□ -0.69
COL9A1-210ENST00000493682 PTTG1IPP53801 180 aa10.74□□□□□ -0.69
COL9A1-210ENST00000493682 MRPL52Q86TS9 123 aaKnown RBP10.74□□□□□ -0.69
COL9A1-210ENST00000493682 A8MWL6 223 aa10.73□□□□□ -0.69
COL9A1-210ENST00000493682 CAMPP49913 170 aa10.73□□□□□ -0.69
COL9A1-210ENST00000493682 FAM231DQ6ZW35 169 aa10.73□□□□□ -0.69
COL9A1-210ENST00000493682 SLC51BQ86UW2 128 aa10.73□□□□□ -0.69
COL9A1-210ENST00000493682 ZNF664Q8N3J9 261 aa10.73□□□□□ -0.69
COL9A1-210ENST00000493682 FAM210AQ96ND0 272 aa10.73□□□□□ -0.69
COL9A1-210ENST00000493682 GAGE2BQ13066 116 aa10.72□□□□□ -0.69
COL9A1-210ENST00000493682 IGLV4-69A0A075B6H9 119 aa10.71□□□□□ -0.69
COL9A1-210ENST00000493682 LOC107984640A0A0U1RRK4 108 aa10.71□□□□□ -0.69
COL9A1-210ENST00000493682 POLR2KP53803 58 aaKnown RBP10.71□□□□□ -0.69
COL9A1-210ENST00000493682 TRBV27A0A0K0K1C4 114 aa10.7□□□□□ -0.7
COL9A1-210ENST00000493682 A0A1W2PNN7 141 aa10.7□□□□□ -0.7
COL9A1-210ENST00000493682 C7orf77A4D0Y5 90 aa10.7□□□□□ -0.7
COL9A1-210ENST00000493682 TMEM250H0YL14 139 aa10.7□□□□□ -0.7
COL9A1-210ENST00000493682 CT83Q5H943 113 aa10.7□□□□□ -0.7
COL9A1-210ENST00000493682 ISOC2Q96AB3 205 aa10.7□□□□□ -0.7
COL9A1-210ENST00000493682 BORCS7Q96B45 105 aa10.7□□□□□ -0.7
COL9A1-210ENST00000493682 MALP21145 153 aa10.69□□□□□ -0.7
COL9A1-210ENST00000493682 TMEM191AQ9H0A3 160 aa10.69□□□□□ -0.7
COL9A1-210ENST00000493682 C1orf196B1AJZ1 125 aa10.68□□□□□ -0.7
COL9A1-210ENST00000493682 COX7A2LO14548 114 aa10.68□□□□□ -0.7
COL9A1-210ENST00000493682 RAB4AP20338 218 aa10.68□□□□□ -0.7
COL9A1-210ENST00000493682 TCTE3Q8IZS6 198 aa10.68□□□□□ -0.7
COL9A1-210ENST00000493682 NUP35Q8NFH5 326 aa10.68□□□□□ -0.7
COL9A1-210ENST00000493682 A0A1B0GUT8 65 aa10.67□□□□□ -0.7
COL9A1-210ENST00000493682 HIGD1CA8MV81 97 aa10.67□□□□□ -0.7
COL9A1-210ENST00000493682 APOMO95445 188 aa10.67□□□□□ -0.7
COL9A1-210ENST00000493682 AMN1Q8IY45 258 aa10.67□□□□□ -0.7
COL9A1-210ENST00000493682 CAMK2N2Q96S95 79 aa10.67□□□□□ -0.7
COL9A1-210ENST00000493682 CEBPGP53567 150 aa10.66□□□□□ -0.7
COL9A1-210ENST00000493682 C9orf116Q5BN46 136 aaPredicted RBP10.66□□□□□ -0.7
COL9A1-210ENST00000493682 TSKUQ8WUA8 353 aa10.66□□□□□ -0.7
COL9A1-210ENST00000493682 PSORS1C2Q9UIG4 136 aa10.66□□□□□ -0.7
COL9A1-210ENST00000493682 CSDC2Q9Y534 153 aaKnown RBP10.66□□□□□ -0.7
COL9A1-210ENST00000493682 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.65□□□□□ -0.7
COL9A1-210ENST00000493682 VCYO14598 125 aa10.65□□□□□ -0.7
COL9A1-210ENST00000493682 FCER1GP30273 86 aa10.65□□□□□ -0.7
COL9A1-210ENST00000493682 RNASE13Q5GAN3 156 aaKnown RBP10.65□□□□□ -0.7
COL9A1-210ENST00000493682 UBE2D4Q9Y2X8 147 aa10.65□□□□□ -0.7
COL9A1-210ENST00000493682 TRAV13-1A0A0B4J241 112 aa10.64□□□□□ -0.71
COL9A1-210ENST00000493682 SMKR1H3BMG3 65 aa10.64□□□□□ -0.71
COL9A1-210ENST00000493682 MT-ND6P03923 174 aa10.64□□□□□ -0.71
COL9A1-210ENST00000493682 C2orf48Q96LS8 159 aa10.64□□□□□ -0.71
COL9A1-210ENST00000493682 BLOC1S1P78537 153 aa10.63□□□□□ -0.71
COL9A1-210ENST00000493682 C5orf38Q86SI9 138 aa10.63□□□□□ -0.71
COL9A1-210ENST00000493682 LINC01551Q86U37 167 aa10.63□□□□□ -0.71
COL9A1-210ENST00000493682 LOC100996750A0A140TA64 210 aa10.62□□□□□ -0.71
COL9A1-210ENST00000493682 RPL18AQ02543 176 aaKnown RBP10.62□□□□□ -0.71
COL9A1-210ENST00000493682 SMAGPQ0VAQ4 97 aa10.62□□□□□ -0.71
COL9A1-210ENST00000493682 NRACQ8N912 160 aa10.62□□□□□ -0.71
COL9A1-210ENST00000493682 OPRPNQ99935 248 aaPredicted RBP10.62□□□□□ -0.71
COL9A1-210ENST00000493682 SMIM7Q9BQ49 75 aa10.62□□□□□ -0.71
COL9A1-210ENST00000493682 KRTAP4-6Q9BYQ5 205 aa10.62□□□□□ -0.71
COL9A1-210ENST00000493682 PPP1R17O96001 155 aa10.61□□□□□ -0.71
COL9A1-210ENST00000493682 SUMO2P61956 95 aaKnown RBP10.61□□□□□ -0.71
COL9A1-210ENST00000493682 C1orf137Q5JT78 98 aa10.61□□□□□ -0.71
COL9A1-210ENST00000493682 ALKAL2Q6UX46 152 aa10.61□□□□□ -0.71
COL9A1-210ENST00000493682 Q6ZUT4 128 aa10.61□□□□□ -0.71
COL9A1-210ENST00000493682 PHF5AQ7RTV0 110 aaKnown RBP10.61□□□□□ -0.71
COL9A1-210ENST00000493682 KIR2DL4Q99706 377 aa10.61□□□□□ -0.71
COL9A1-210ENST00000493682 OSTCQ9NRP0 149 aa10.61□□□□□ -0.71
COL9A1-210ENST00000493682 SPAG11BQ08648 103 aa10.6□□□□□ -0.71
COL9A1-210ENST00000493682 RIGQ13278 110 aa10.6□□□□□ -0.71
COL9A1-210ENST00000493682 RNF151Q2KHN1 245 aa10.6□□□□□ -0.71
COL9A1-210ENST00000493682 TIMM21Q9BVV7 248 aa10.59□□□□□ -0.71
COL9A1-210ENST00000493682 ZNF727A8MUV8 499 aa10.58□□□□□ -0.72
COL9A1-210ENST00000493682 EIF5A2Q9GZV4 153 aaKnown RBP10.58□□□□□ -0.72
COL9A1-210ENST00000493682 V9GYV3 84 aa10.58□□□□□ -0.72
COL9A1-210ENST00000493682 PPP1R2P9O14990 202 aa10.57□□□□□ -0.72
COL9A1-210ENST00000493682 OR10D4PQ8NGN7 298 aa10.57□□□□□ -0.72
COL9A1-210ENST00000493682 IGLV7-43P04211 117 aa10.56□□□□□ -0.72
COL9A1-210ENST00000493682 MRPL51Q4U2R6 128 aaKnown RBP10.56□□□□□ -0.72
COL9A1-210ENST00000493682 PRR26Q8N8Z3 221 aa10.56□□□□□ -0.72
COL9A1-210ENST00000493682 DIRC1Q969H9 104 aa10.56□□□□□ -0.72
COL9A1-210ENST00000493682 TMEM18Q96B42 140 aa10.56□□□□□ -0.72
COL9A1-210ENST00000493682 MRPL35Q9NZE8 188 aaKnown RBP10.56□□□□□ -0.72
COL9A1-210ENST00000493682 ORAOV1Q8WV07 137 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms