RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 BTF3L4Q96K17 158 aa7.71□□□□□ -1.18
CPSF3-204ENST00000489403 CARD19Q96LW7 228 aa7.71□□□□□ -1.18
CPSF3-204ENST00000489403 LINC00474Q9P2X8 69 aa7.71□□□□□ -1.18
CPSF3-204ENST00000489403 GATCO43716 136 aaKnown RBP7.7□□□□□ -1.18
CPSF3-204ENST00000489403 TSHBP01222 138 aa7.7□□□□□ -1.18
CPSF3-204ENST00000489403 KRTAP10-8P60410 259 aa7.7□□□□□ -1.18
CPSF3-204ENST00000489403 SLC51BQ86UW2 128 aa7.7□□□□□ -1.18
CPSF3-204ENST00000489403 TMEM242Q9NWH2 141 aa7.7□□□□□ -1.18
CPSF3-204ENST00000489403 PKIGQ9Y2B9 76 aa7.7□□□□□ -1.18
CPSF3-204ENST00000489403 FAM231DQ6ZW35 169 aa7.69□□□□□ -1.18
CPSF3-204ENST00000489403 MRAP2Q96G30 205 aa7.69□□□□□ -1.18
CPSF3-204ENST00000489403 CDC42SE2Q9NRR3 84 aa7.69□□□□□ -1.18
CPSF3-204ENST00000489403 A8MWL6 223 aa7.68□□□□□ -1.18
CPSF3-204ENST00000489403 SYCNQ0VAF6 134 aa7.68□□□□□ -1.18
CPSF3-204ENST00000489403 SRSF9Q13242 221 aaKnown RBP eCLIP7.68□□□□□ -1.18
CPSF3-204ENST00000489403 SS18Q15532 418 aa7.68□□□□□ -1.18
CPSF3-204ENST00000489403 REG3GQ6UW15 175 aa7.68□□□□□ -1.18
CPSF3-204ENST00000489403 CD164L2Q6UWJ8 174 aa7.68□□□□□ -1.18
CPSF3-204ENST00000489403 Q6ZRP5 223 aa7.68□□□□□ -1.18
CPSF3-204ENST00000489403 MRPL52Q86TS9 123 aaKnown RBP7.68□□□□□ -1.18
CPSF3-204ENST00000489403 TCTE3Q8IZS6 198 aa7.68□□□□□ -1.18
CPSF3-204ENST00000489403 ST20Q9HBF5 79 aa7.68□□□□□ -1.18
CPSF3-204ENST00000489403 TMEM250H0YL14 139 aa7.67□□□□□ -1.18
CPSF3-204ENST00000489403 ZNF561-AS1K7EIQ3 104 aa7.67□□□□□ -1.18
CPSF3-204ENST00000489403 CAMPP49913 170 aa7.67□□□□□ -1.18
CPSF3-204ENST00000489403 PTTG1IPP53801 180 aa7.67□□□□□ -1.18
CPSF3-204ENST00000489403 POLR2KP53803 58 aaKnown RBP7.67□□□□□ -1.18
CPSF3-204ENST00000489403 CT83Q5H943 113 aa7.67□□□□□ -1.18
CPSF3-204ENST00000489403 FAM210AQ96ND0 272 aa7.67□□□□□ -1.18
CPSF3-204ENST00000489403 TRBV27A0A0K0K1C4 114 aa7.66□□□□□ -1.18
CPSF3-204ENST00000489403 C7orf77A4D0Y5 90 aa7.66□□□□□ -1.18
CPSF3-204ENST00000489403 ZNF664Q8N3J9 261 aa7.66□□□□□ -1.18
CPSF3-204ENST00000489403 BORCS7Q96B45 105 aa7.66□□□□□ -1.18
CPSF3-204ENST00000489403 TMEM191AQ9H0A3 160 aa7.66□□□□□ -1.18
CPSF3-204ENST00000489403 IGLV4-69A0A075B6H9 119 aa7.65□□□□□ -1.18
CPSF3-204ENST00000489403 LOC107984640A0A0U1RRK4 108 aa7.65□□□□□ -1.18
CPSF3-204ENST00000489403 RAB4AP20338 218 aa7.65□□□□□ -1.18
CPSF3-204ENST00000489403 AMN1Q8IY45 258 aa7.65□□□□□ -1.18
CPSF3-204ENST00000489403 A0A1B0GUT8 65 aa7.64□□□□□ -1.19
CPSF3-204ENST00000489403 A0A1W2PNN7 141 aa7.64□□□□□ -1.19
CPSF3-204ENST00000489403 HIGD1CA8MV81 97 aa7.64□□□□□ -1.19
CPSF3-204ENST00000489403 CEBPGP53567 150 aa7.64□□□□□ -1.19
CPSF3-204ENST00000489403 GAGE2BQ13066 116 aa7.64□□□□□ -1.19
CPSF3-204ENST00000489403 LCE2AQ5TA79 106 aaPredicted RBP7.64□□□□□ -1.19
CPSF3-204ENST00000489403 NUP35Q8NFH5 326 aa7.64□□□□□ -1.19
CPSF3-204ENST00000489403 TSKUQ8WUA8 353 aa7.64□□□□□ -1.19
CPSF3-204ENST00000489403 ISOC2Q96AB3 205 aa7.64□□□□□ -1.19
CPSF3-204ENST00000489403 SMKR1H3BMG3 65 aa7.63□□□□□ -1.19
CPSF3-204ENST00000489403 MALP21145 153 aa7.63□□□□□ -1.19
CPSF3-204ENST00000489403 RNASE13Q5GAN3 156 aaKnown RBP7.63□□□□□ -1.19
CPSF3-204ENST00000489403 ALKAL2Q6UX46 152 aa7.63□□□□□ -1.19
CPSF3-204ENST00000489403 UBE2D4Q9Y2X8 147 aa7.63□□□□□ -1.19
CPSF3-204ENST00000489403 C1orf196B1AJZ1 125 aa7.62□□□□□ -1.19
CPSF3-204ENST00000489403 COX7A2LO14548 114 aa7.62□□□□□ -1.19
CPSF3-204ENST00000489403 BLOC1S1P78537 153 aa7.62□□□□□ -1.19
CPSF3-204ENST00000489403 LINC01551Q86U37 167 aa7.62□□□□□ -1.19
CPSF3-204ENST00000489403 CAMK2N2Q96S95 79 aa7.62□□□□□ -1.19
CPSF3-204ENST00000489403 CSDC2Q9Y534 153 aaKnown RBP7.62□□□□□ -1.19
CPSF3-204ENST00000489403 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.61□□□□□ -1.19
CPSF3-204ENST00000489403 VCYO14598 125 aa7.61□□□□□ -1.19
CPSF3-204ENST00000489403 APOMO95445 188 aa7.61□□□□□ -1.19
CPSF3-204ENST00000489403 FCER1GP30273 86 aa7.61□□□□□ -1.19
CPSF3-204ENST00000489403 C9orf116Q5BN46 136 aaPredicted RBP7.61□□□□□ -1.19
CPSF3-204ENST00000489403 NRACQ8N912 160 aa7.61□□□□□ -1.19
CPSF3-204ENST00000489403 SMIM7Q9BQ49 75 aa7.61□□□□□ -1.19
CPSF3-204ENST00000489403 PSORS1C2Q9UIG4 136 aa7.61□□□□□ -1.19
CPSF3-204ENST00000489403 TRAV13-1A0A0B4J241 112 aa7.6□□□□□ -1.19
CPSF3-204ENST00000489403 SUMO2P61956 95 aaKnown RBP7.6□□□□□ -1.19
CPSF3-204ENST00000489403 RPL18AQ02543 176 aaKnown RBP7.6□□□□□ -1.19
CPSF3-204ENST00000489403 Q6ZUT4 128 aa7.6□□□□□ -1.19
CPSF3-204ENST00000489403 C5orf38Q86SI9 138 aa7.6□□□□□ -1.19
CPSF3-204ENST00000489403 C2orf48Q96LS8 159 aa7.6□□□□□ -1.19
CPSF3-204ENST00000489403 OSTCQ9NRP0 149 aa7.6□□□□□ -1.19
CPSF3-204ENST00000489403 SPAG11BQ08648 103 aa7.59□□□□□ -1.19
CPSF3-204ENST00000489403 PHF5AQ7RTV0 110 aaKnown RBP7.59□□□□□ -1.19
CPSF3-204ENST00000489403 KIR2DL4Q99706 377 aa7.59□□□□□ -1.19
CPSF3-204ENST00000489403 V9GYV3 84 aa7.59□□□□□ -1.19
CPSF3-204ENST00000489403 LPAP08519 4548 aa7.59□□□□□ -1.19
CPSF3-204ENST00000489403 ZNF727A8MUV8 499 aa7.58□□□□□ -1.2
CPSF3-204ENST00000489403 PPP1R17O96001 155 aa7.58□□□□□ -1.2
CPSF3-204ENST00000489403 MT-ND6P03923 174 aa7.58□□□□□ -1.2
CPSF3-204ENST00000489403 SMAGPQ0VAQ4 97 aa7.58□□□□□ -1.2
CPSF3-204ENST00000489403 RIGQ13278 110 aa7.58□□□□□ -1.2
CPSF3-204ENST00000489403 OPRPNQ99935 248 aaPredicted RBP7.58□□□□□ -1.2
CPSF3-204ENST00000489403 EIF5A2Q9GZV4 153 aaKnown RBP7.58□□□□□ -1.2
CPSF3-204ENST00000489403 PPP1R2P9O14990 202 aa7.57□□□□□ -1.2
CPSF3-204ENST00000489403 C1orf137Q5JT78 98 aa7.57□□□□□ -1.2
CPSF3-204ENST00000489403 TIMM21Q9BVV7 248 aa7.57□□□□□ -1.2
CPSF3-204ENST00000489403 SRP19P09132 144 aaKnown RBP7.56□□□□□ -1.2
CPSF3-204ENST00000489403 RNF151Q2KHN1 245 aa7.56□□□□□ -1.2
CPSF3-204ENST00000489403 MRPL51Q4U2R6 128 aaKnown RBP7.56□□□□□ -1.2
CPSF3-204ENST00000489403 OR10D4PQ8NGN7 298 aa7.56□□□□□ -1.2
CPSF3-204ENST00000489403 TMEM18Q96B42 140 aa7.56□□□□□ -1.2
CPSF3-204ENST00000489403 RPL39P62891 51 aaKnown RBP7.55□□□□□ -1.2
CPSF3-204ENST00000489403 FAM104BQ5XKR9 115 aa7.55□□□□□ -1.2
CPSF3-204ENST00000489403 FAM104AQ969W3 186 aa7.55□□□□□ -1.2
CPSF3-204ENST00000489403 MRPL35Q9NZE8 188 aaKnown RBP7.55□□□□□ -1.2
CPSF3-204ENST00000489403 AKAP14Q86UN6 197 aa7.54□□□□□ -1.2
CPSF3-204ENST00000489403 KRTAP11-1Q8IUC1 163 aa7.54□□□□□ -1.2
CPSF3-204ENST00000489403 ORAOV1Q8WV07 137 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms