RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 CCL25O15444 150 aa7.7□□□□□ -1.18
SQSTM1-207ENST00000481335 SRP19P09132 144 aaKnown RBP7.7□□□□□ -1.18
SQSTM1-207ENST00000481335 RAB4AP20338 218 aa7.7□□□□□ -1.18
SQSTM1-207ENST00000481335 RIGQ13278 110 aa7.7□□□□□ -1.18
SQSTM1-207ENST00000481335 C7orf33Q8WU49 177 aa7.7□□□□□ -1.18
SQSTM1-207ENST00000481335 DPH3Q96FX2 82 aa7.7□□□□□ -1.18
SQSTM1-207ENST00000481335 CSDC2Q9Y534 153 aaKnown RBP7.7□□□□□ -1.18
SQSTM1-207ENST00000481335 hCG_2014768A0A024R1R8 64 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 PPP1R2P9O14990 202 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 CHTF8P0CG12 524 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 HNRNPA3P51991 378 aaKnown RBP7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 COX6A2Q02221 97 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 SS18Q15532 418 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 HIGD2BQ4VC39 106 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 CDC42SE2Q9NRR3 84 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 TMEM242Q9NWH2 141 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 NAT8BQ9UHF3 227 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 V9GYV3 84 aa7.69□□□□□ -1.18
SQSTM1-207ENST00000481335 VCYO14598 125 aa7.68□□□□□ -1.18
SQSTM1-207ENST00000481335 TCAPO15273 167 aa7.68□□□□□ -1.18
SQSTM1-207ENST00000481335 CD164L2Q6UWJ8 174 aa7.68□□□□□ -1.18
SQSTM1-207ENST00000481335 AMN1Q8IY45 258 aa7.68□□□□□ -1.18
SQSTM1-207ENST00000481335 ISOC2Q96AB3 205 aa7.68□□□□□ -1.18
SQSTM1-207ENST00000481335 KIR2DL4Q99706 377 aa7.68□□□□□ -1.18
SQSTM1-207ENST00000481335 SMDT1Q9H4I9 107 aa7.68□□□□□ -1.18
SQSTM1-207ENST00000481335 A0A1B0GW15 77 aa7.67□□□□□ -1.18
SQSTM1-207ENST00000481335 LINC00862A6NCI5 91 aa7.67□□□□□ -1.18
SQSTM1-207ENST00000481335 FCER1GP30273 86 aa7.67□□□□□ -1.18
SQSTM1-207ENST00000481335 XCL1P47992 114 aa7.67□□□□□ -1.18
SQSTM1-207ENST00000481335 SUMO2P61956 95 aaKnown RBP7.67□□□□□ -1.18
SQSTM1-207ENST00000481335 TMEM241Q24JQ0 296 aa7.67□□□□□ -1.18
SQSTM1-207ENST00000481335 ZNF664Q8N3J9 261 aa7.67□□□□□ -1.18
SQSTM1-207ENST00000481335 NUP35Q8NFH5 326 aa7.67□□□□□ -1.18
SQSTM1-207ENST00000481335 GAS8-AS1O95177 125 aa7.66□□□□□ -1.18
SQSTM1-207ENST00000481335 MAJINQ3KP22 176 aa7.66□□□□□ -1.18
SQSTM1-207ENST00000481335 PRSS3P2Q8NHM4 247 aa7.66□□□□□ -1.18
SQSTM1-207ENST00000481335 TMEM18Q96B42 140 aa7.66□□□□□ -1.18
SQSTM1-207ENST00000481335 CARD19Q96LW7 228 aa7.66□□□□□ -1.18
SQSTM1-207ENST00000481335 NAT8Q9UHE5 227 aa7.66□□□□□ -1.18
SQSTM1-207ENST00000481335 C1orf196B1AJZ1 125 aa7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 ZNF561-AS1K7EIQ3 104 aa7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 PHOX2AO14813 284 aa7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 RPL23P62829 140 aaKnown RBP7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 RPL32P62910 135 aaKnown RBP7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 NRACQ8N912 160 aa7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 C20orf78Q9BR46 151 aa7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 TIMM21Q9BVV7 248 aa7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 PLA2G2DQ9UNK4 145 aa7.65□□□□□ -1.18
SQSTM1-207ENST00000481335 HMCN2Q8NDA2 5059 aa7.65□□□□□ -1.19
SQSTM1-207ENST00000481335 TRBV24-1A0A075B6N3 115 aa7.64□□□□□ -1.19
SQSTM1-207ENST00000481335 IGKV2-24A0A0C4DH68 120 aa7.64□□□□□ -1.19
SQSTM1-207ENST00000481335 SMIM27A0A1W2PRY6 76 aa7.64□□□□□ -1.19
SQSTM1-207ENST00000481335 S100A8P05109 93 aa7.64□□□□□ -1.19
SQSTM1-207ENST00000481335 FAM104BQ5XKR9 115 aa7.64□□□□□ -1.19
SQSTM1-207ENST00000481335 STPG4Q8N801 248 aa7.64□□□□□ -1.19
SQSTM1-207ENST00000481335 UBE2D4Q9Y2X8 147 aa7.64□□□□□ -1.19
SQSTM1-207ENST00000481335 A0A096LNI7 61 aa7.63□□□□□ -1.19
SQSTM1-207ENST00000481335 SYCNQ0VAF6 134 aa7.63□□□□□ -1.19
SQSTM1-207ENST00000481335 PEA15Q15121 130 aa7.63□□□□□ -1.19
SQSTM1-207ENST00000481335 ADIRFQ15847 76 aa7.63□□□□□ -1.19
SQSTM1-207ENST00000481335 COX7A2LO14548 114 aa7.62□□□□□ -1.19
SQSTM1-207ENST00000481335 MT1HL1P0DM35 61 aa7.62□□□□□ -1.19
SQSTM1-207ENST00000481335 MALP21145 153 aa7.62□□□□□ -1.19
SQSTM1-207ENST00000481335 CAMPP49913 170 aa7.62□□□□□ -1.19
SQSTM1-207ENST00000481335 PRR3P79522 188 aaKnown RBP7.62□□□□□ -1.19
SQSTM1-207ENST00000481335 MRPL51Q4U2R6 128 aaKnown RBP7.62□□□□□ -1.19
SQSTM1-207ENST00000481335 F8W036 122 aa7.61□□□□□ -1.19
SQSTM1-207ENST00000481335 SMKR1H3BMG3 65 aa7.61□□□□□ -1.19
SQSTM1-207ENST00000481335 APOMO95445 188 aa7.61□□□□□ -1.19
SQSTM1-207ENST00000481335 C2orf48Q96LS8 159 aa7.61□□□□□ -1.19
SQSTM1-207ENST00000481335 IGLV4-69A0A075B6H9 119 aa7.6□□□□□ -1.19
SQSTM1-207ENST00000481335 LOC107984640A0A0U1RRK4 108 aa7.6□□□□□ -1.19
SQSTM1-207ENST00000481335 PPBPP02775 128 aa7.6□□□□□ -1.19
SQSTM1-207ENST00000481335 CKS2P33552 79 aa7.6□□□□□ -1.19
SQSTM1-207ENST00000481335 PTTG1IPP53801 180 aa7.6□□□□□ -1.19
SQSTM1-207ENST00000481335 HBBP68871 147 aa7.6□□□□□ -1.19
SQSTM1-207ENST00000481335 SPANXA1Q9NS26 97 aa7.6□□□□□ -1.19
SQSTM1-207ENST00000481335 F8WDY8 70 aa7.59□□□□□ -1.19
SQSTM1-207ENST00000481335 ATP5L2Q7Z4Y8 100 aa7.59□□□□□ -1.19
SQSTM1-207ENST00000481335 OR10D4PQ8NGN7 298 aa7.59□□□□□ -1.19
SQSTM1-207ENST00000481335 SMIM2Q9BVW6 85 aa7.59□□□□□ -1.19
SQSTM1-207ENST00000481335 TRAV13-1A0A0B4J241 112 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 A0A1B0GXF2 115 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 C9JQL5 133 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 TNFRSF6BO95407 300 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 MRPS36P82909 103 aaKnown RBP7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 RNF151Q2KHN1 245 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 SPINK6Q6UWN8 80 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 Q6ZRP5 223 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 Q6ZUT4 128 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 LINC00526Q96FQ7 95 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 LINC01600Q96MT4 127 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 CAMK2N2Q96S95 79 aa7.58□□□□□ -1.2
SQSTM1-207ENST00000481335 TNXBP22105 4242 aa7.57□□□□□ -1.2
SQSTM1-207ENST00000481335 D6R8Y8 96 aa7.57□□□□□ -1.2
SQSTM1-207ENST00000481335 SRSF3P84103 164 aaKnown RBP7.56□□□□□ -1.2
SQSTM1-207ENST00000481335 REG3GQ6UW15 175 aa7.56□□□□□ -1.2
SQSTM1-207ENST00000481335 A0A1B0GVG6 124 aa7.55□□□□□ -1.2
SQSTM1-207ENST00000481335 SPAG11BQ08648 103 aa7.55□□□□□ -1.2
SQSTM1-207ENST00000481335 RNASE13Q5GAN3 156 aaKnown RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms