RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 IGHV1-58A0A0C4DH39 117 aa10.99□□□□□ -0.65
COL7A1-208ENST00000470076 HIGD1CA8MV81 97 aa10.99□□□□□ -0.65
COL7A1-208ENST00000470076 GAS8-AS1O95177 125 aa10.99□□□□□ -0.65
COL7A1-208ENST00000470076 MRPL52Q86TS9 123 aaKnown RBP10.99□□□□□ -0.65
COL7A1-208ENST00000470076 TSKUQ8WUA8 353 aa10.99□□□□□ -0.65
COL7A1-208ENST00000470076 SMIM7Q9BQ49 75 aa10.99□□□□□ -0.65
COL7A1-208ENST00000470076 TMEM242Q9NWH2 141 aa10.99□□□□□ -0.65
COL7A1-208ENST00000470076 A0A096LNI7 61 aa10.98□□□□□ -0.65
COL7A1-208ENST00000470076 TRBV27A0A0K0K1C4 114 aa10.98□□□□□ -0.65
COL7A1-208ENST00000470076 POLR2KP53803 58 aaKnown RBP10.98□□□□□ -0.65
COL7A1-208ENST00000470076 SS18Q15532 418 aa10.98□□□□□ -0.65
COL7A1-208ENST00000470076 AKAP14Q86UN6 197 aa10.98□□□□□ -0.65
COL7A1-208ENST00000470076 PRR3P79522 188 aaKnown RBP10.97□□□□□ -0.65
COL7A1-208ENST00000470076 LINC01551Q86U37 167 aa10.97□□□□□ -0.65
COL7A1-208ENST00000470076 EIF5A2Q9GZV4 153 aaKnown RBP10.97□□□□□ -0.65
COL7A1-208ENST00000470076 OSTCQ9NRP0 149 aa10.97□□□□□ -0.65
COL7A1-208ENST00000470076 CDC42SE2Q9NRR3 84 aa10.97□□□□□ -0.65
COL7A1-208ENST00000470076 C7orf77A4D0Y5 90 aa10.96□□□□□ -0.65
COL7A1-208ENST00000470076 RAB4AP20338 218 aa10.96□□□□□ -0.65
COL7A1-208ENST00000470076 CD164L2Q6UWJ8 174 aa10.96□□□□□ -0.65
COL7A1-208ENST00000470076 ZNF664Q8N3J9 261 aa10.96□□□□□ -0.65
COL7A1-208ENST00000470076 CARD19Q96LW7 228 aa10.96□□□□□ -0.65
COL7A1-208ENST00000470076 TNXBP22105 4242 aa10.95□□□□□ -0.66
COL7A1-208ENST00000470076 ZNF727A8MUV8 499 aa10.94□□□□□ -0.66
COL7A1-208ENST00000470076 ZNF561-AS1K7EIQ3 104 aa10.94□□□□□ -0.66
COL7A1-208ENST00000470076 AMN1Q8IY45 258 aa10.94□□□□□ -0.66
COL7A1-208ENST00000470076 LINC00526Q96FQ7 95 aa10.94□□□□□ -0.66
COL7A1-208ENST00000470076 VCYO14598 125 aa10.93□□□□□ -0.66
COL7A1-208ENST00000470076 PPP1R17O96001 155 aa10.93□□□□□ -0.66
COL7A1-208ENST00000470076 SYCNQ0VAF6 134 aa10.93□□□□□ -0.66
COL7A1-208ENST00000470076 SMAGPQ0VAQ4 97 aa10.93□□□□□ -0.66
COL7A1-208ENST00000470076 RIGQ13278 110 aa10.93□□□□□ -0.66
COL7A1-208ENST00000470076 LINC01600Q96MT4 127 aa10.93□□□□□ -0.66
COL7A1-208ENST00000470076 FCER1GP30273 86 aa10.92□□□□□ -0.66
COL7A1-208ENST00000470076 CSDC2Q9Y534 153 aaKnown RBP10.92□□□□□ -0.66
COL7A1-208ENST00000470076 C1orf196B1AJZ1 125 aa10.91□□□□□ -0.66
COL7A1-208ENST00000470076 SRP19P09132 144 aaKnown RBP10.91□□□□□ -0.66
COL7A1-208ENST00000470076 NUP35Q8NFH5 326 aa10.91□□□□□ -0.66
COL7A1-208ENST00000470076 ISOC2Q96AB3 205 aa10.91□□□□□ -0.66
COL7A1-208ENST00000470076 V9GYV3 84 aa10.91□□□□□ -0.66
COL7A1-208ENST00000470076 SMKR1H3BMG3 65 aa10.9□□□□□ -0.66
COL7A1-208ENST00000470076 MALP21145 153 aa10.9□□□□□ -0.66
COL7A1-208ENST00000470076 CAMPP49913 170 aa10.9□□□□□ -0.66
COL7A1-208ENST00000470076 SUMO2P61956 95 aaKnown RBP10.9□□□□□ -0.66
COL7A1-208ENST00000470076 SPINK6Q6UWN8 80 aa10.9□□□□□ -0.66
COL7A1-208ENST00000470076 KIR2DL4Q99706 377 aa10.9□□□□□ -0.66
COL7A1-208ENST00000470076 COX7A2LO14548 114 aa10.89□□□□□ -0.67
COL7A1-208ENST00000470076 NRACQ8N912 160 aa10.89□□□□□ -0.67
COL7A1-208ENST00000470076 UBE2D4Q9Y2X8 147 aa10.89□□□□□ -0.67
COL7A1-208ENST00000470076 hCG_2014768A0A024R1R8 64 aa10.88□□□□□ -0.67
COL7A1-208ENST00000470076 LOC107984640A0A0U1RRK4 108 aa10.88□□□□□ -0.67
COL7A1-208ENST00000470076 PPP1R2P9O14990 202 aa10.88□□□□□ -0.67
COL7A1-208ENST00000470076 PTTG1IPP53801 180 aa10.88□□□□□ -0.67
COL7A1-208ENST00000470076 Q6ZRP5 223 aa10.88□□□□□ -0.67
COL7A1-208ENST00000470076 NAT8BQ9UHF3 227 aa10.88□□□□□ -0.67
COL7A1-208ENST00000470076 IGLV4-69A0A075B6H9 119 aa10.87□□□□□ -0.67
COL7A1-208ENST00000470076 TMEM241Q24JQ0 296 aa10.87□□□□□ -0.67
COL7A1-208ENST00000470076 FAM74A3Q4VXF1 159 aa10.87□□□□□ -0.67
COL7A1-208ENST00000470076 REG3GQ6UW15 175 aa10.87□□□□□ -0.67
COL7A1-208ENST00000470076 A0A0J9YXV3 536 aa10.86□□□□□ -0.67
COL7A1-208ENST00000470076 FAM104BQ5XKR9 115 aa10.86□□□□□ -0.67
COL7A1-208ENST00000470076 TMEM18Q96B42 140 aa10.86□□□□□ -0.67
COL7A1-208ENST00000470076 TIMM21Q9BVV7 248 aa10.86□□□□□ -0.67
COL7A1-208ENST00000470076 LRP2P98164 4655 aa10.85□□□□□ -0.67
COL7A1-208ENST00000470076 TRAV13-1A0A0B4J241 112 aa10.85□□□□□ -0.67
COL7A1-208ENST00000470076 LINC00862A6NCI5 91 aa10.85□□□□□ -0.67
COL7A1-208ENST00000470076 GAGE2BQ13066 116 aa10.85□□□□□ -0.67
COL7A1-208ENST00000470076 SRSF9Q13242 221 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL7A1-208ENST00000470076 MRPL51Q4U2R6 128 aaKnown RBP10.85□□□□□ -0.67
COL7A1-208ENST00000470076 RNASE13Q5GAN3 156 aaKnown RBP10.85□□□□□ -0.67
COL7A1-208ENST00000470076 C2orf48Q96LS8 159 aa10.85□□□□□ -0.67
COL7A1-208ENST00000470076 CAMK2N2Q96S95 79 aa10.85□□□□□ -0.67
COL7A1-208ENST00000470076 APOMO95445 188 aa10.84□□□□□ -0.67
COL7A1-208ENST00000470076 RPL23P62829 140 aaKnown RBP10.84□□□□□ -0.67
COL7A1-208ENST00000470076 C20orf78Q9BR46 151 aa10.84□□□□□ -0.67
COL7A1-208ENST00000470076 A0A1B0GW15 77 aa10.83□□□□□ -0.68
COL7A1-208ENST00000470076 SMIM27A0A1W2PRY6 76 aa10.83□□□□□ -0.68
COL7A1-208ENST00000470076 TCAPO15273 167 aa10.83□□□□□ -0.68
COL7A1-208ENST00000470076 Q6ZUT4 128 aa10.83□□□□□ -0.68
COL7A1-208ENST00000470076 TRBV24-1A0A075B6N3 115 aa10.82□□□□□ -0.68
COL7A1-208ENST00000470076 KRTAP10-8P60410 259 aa10.82□□□□□ -0.68
COL7A1-208ENST00000470076 RPL32P62910 135 aaKnown RBP10.82□□□□□ -0.68
COL7A1-208ENST00000470076 ADIRFQ15847 76 aa10.82□□□□□ -0.68
COL7A1-208ENST00000470076 C5orf38Q86SI9 138 aa10.82□□□□□ -0.68
COL7A1-208ENST00000470076 NAT8Q9UHE5 227 aa10.82□□□□□ -0.68
COL7A1-208ENST00000470076 CKS2P33552 79 aa10.81□□□□□ -0.68
COL7A1-208ENST00000470076 A0A1W2PNN7 141 aa10.8□□□□□ -0.68
COL7A1-208ENST00000470076 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.8□□□□□ -0.68
COL7A1-208ENST00000470076 SPAG11BQ08648 103 aa10.8□□□□□ -0.68
COL7A1-208ENST00000470076 OR10D4PQ8NGN7 298 aa10.8□□□□□ -0.68
COL7A1-208ENST00000470076 TNFRSF6BO95407 300 aa10.79□□□□□ -0.68
COL7A1-208ENST00000470076 RPL18AQ02543 176 aaKnown RBP10.79□□□□□ -0.68
COL7A1-208ENST00000470076 RNF151Q2KHN1 245 aa10.79□□□□□ -0.68
COL7A1-208ENST00000470076 C9orf116Q5BN46 136 aaPredicted RBP10.79□□□□□ -0.68
COL7A1-208ENST00000470076 S100A8P05109 93 aa10.78□□□□□ -0.68
COL7A1-208ENST00000470076 RPL39P62891 51 aaKnown RBP10.78□□□□□ -0.68
COL7A1-208ENST00000470076 SMIM2Q9BVW6 85 aa10.78□□□□□ -0.68
COL7A1-208ENST00000470076 SPANXA1Q9NS26 97 aa10.78□□□□□ -0.68
COL7A1-208ENST00000470076 C9JQL5 133 aa10.77□□□□□ -0.69
COL7A1-208ENST00000470076 F8W036 122 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms