RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 UQCC3Q6UW78 93 aa12.83□□□□□ -0.36
COL6A1-203ENST00000466285 SMIM7Q9BQ49 75 aa12.83□□□□□ -0.36
COL6A1-203ENST00000466285 ESDP10768 282 aa12.82□□□□□ -0.36
COL6A1-203ENST00000466285 OR5A1Q8NGJ0 315 aa12.82□□□□□ -0.36
COL6A1-203ENST00000466285 LINC01600Q96MT4 127 aa12.82□□□□□ -0.36
COL6A1-203ENST00000466285 LINC00959A0A1B0GUT2 108 aa12.81□□□□□ -0.36
COL6A1-203ENST00000466285 LINC01551Q86U37 167 aa12.81□□□□□ -0.36
COL6A1-203ENST00000466285 TRBV6-5A0A0K0K1A5 114 aa12.8□□□□□ -0.36
COL6A1-203ENST00000466285 ZNF727A8MUV8 499 aa12.8□□□□□ -0.36
COL6A1-203ENST00000466285 H7C423 109 aa12.79□□□□□ -0.36
COL6A1-203ENST00000466285 I3L3M4 83 aa12.79□□□□□ -0.36
COL6A1-203ENST00000466285 GATCO43716 136 aaKnown RBP12.79□□□□□ -0.36
COL6A1-203ENST00000466285 COMMD7Q86VX2 200 aa12.79□□□□□ -0.36
COL6A1-203ENST00000466285 CARD19Q96LW7 228 aa12.79□□□□□ -0.36
COL6A1-203ENST00000466285 CEBPGP53567 150 aa12.78□□□□□ -0.36
COL6A1-203ENST00000466285 FAM231DQ6ZW35 169 aa12.78□□□□□ -0.36
COL6A1-203ENST00000466285 SMKR1H3BMG3 65 aa12.77□□□□□ -0.37
COL6A1-203ENST00000466285 ZNF25P17030 456 aaPredicted RBP12.77□□□□□ -0.37
COL6A1-203ENST00000466285 PMCHP20382 165 aa12.77□□□□□ -0.37
COL6A1-203ENST00000466285 NAT8Q9UHE5 227 aa12.77□□□□□ -0.37
COL6A1-203ENST00000466285 ADCYAP1P18509 176 aa12.76□□□□□ -0.37
COL6A1-203ENST00000466285 RPL23P62829 140 aaKnown RBP12.76□□□□□ -0.37
COL6A1-203ENST00000466285 TMEM241Q24JQ0 296 aa12.76□□□□□ -0.37
COL6A1-203ENST00000466285 RNASE13Q5GAN3 156 aaKnown RBP12.76□□□□□ -0.37
COL6A1-203ENST00000466285 IGHV1-58A0A0C4DH39 117 aa12.75□□□□□ -0.37
COL6A1-203ENST00000466285 A0A0J9YXV3 536 aa12.75□□□□□ -0.37
COL6A1-203ENST00000466285 TMEM218A2RU14 115 aa12.75□□□□□ -0.37
COL6A1-203ENST00000466285 SMIM15Q7Z3B0 74 aa12.75□□□□□ -0.37
COL6A1-203ENST00000466285 CDC42SE2Q9NRR3 84 aa12.75□□□□□ -0.37
COL6A1-203ENST00000466285 POLR2KP53803 58 aaKnown RBP12.74□□□□□ -0.37
COL6A1-203ENST00000466285 KRTAP10-8P60410 259 aa12.74□□□□□ -0.37
COL6A1-203ENST00000466285 AMN1Q8IY45 258 aa12.74□□□□□ -0.37
COL6A1-203ENST00000466285 ISOC2Q96AB3 205 aa12.74□□□□□ -0.37
COL6A1-203ENST00000466285 MRAP2Q96G30 205 aa12.74□□□□□ -0.37
COL6A1-203ENST00000466285 ST20Q9HBF5 79 aa12.74□□□□□ -0.37
COL6A1-203ENST00000466285 LPAP08519 4548 aa12.74□□□□□ -0.37
COL6A1-203ENST00000466285 C10orf91Q5T1B1 145 aa12.73□□□□□ -0.37
COL6A1-203ENST00000466285 MRPL52Q86TS9 123 aaKnown RBP12.73□□□□□ -0.37
COL6A1-203ENST00000466285 BTF3L4Q96K17 158 aa12.73□□□□□ -0.37
COL6A1-203ENST00000466285 HIGD1CA8MV81 97 aa12.72□□□□□ -0.37
COL6A1-203ENST00000466285 A8MWL6 223 aa12.72□□□□□ -0.37
COL6A1-203ENST00000466285 SYCNQ0VAF6 134 aa12.72□□□□□ -0.37
COL6A1-203ENST00000466285 SRSF9Q13242 221 aaKnown RBP eCLIP12.72□□□□□ -0.37
COL6A1-203ENST00000466285 CT83Q5H943 113 aa12.72□□□□□ -0.37
COL6A1-203ENST00000466285 TMEM101Q96IK0 257 aa12.72□□□□□ -0.37
COL6A1-203ENST00000466285 OSTCQ9NRP0 149 aa12.72□□□□□ -0.37
COL6A1-203ENST00000466285 A0A1W2PNN7 141 aa12.71□□□□□ -0.37
COL6A1-203ENST00000466285 RAB4AP20338 218 aa12.71□□□□□ -0.37
COL6A1-203ENST00000466285 PTTG1IPP53801 180 aa12.71□□□□□ -0.37
COL6A1-203ENST00000466285 CD164L2Q6UWJ8 174 aa12.71□□□□□ -0.37
COL6A1-203ENST00000466285 ZNF664Q8N3J9 261 aa12.71□□□□□ -0.37
COL6A1-203ENST00000466285 TMEM191AQ9H0A3 160 aa12.71□□□□□ -0.37
COL6A1-203ENST00000466285 IGLV4-69A0A075B6H9 119 aa12.7□□□□□ -0.38
COL6A1-203ENST00000466285 TRBV27A0A0K0K1C4 114 aa12.7□□□□□ -0.38
COL6A1-203ENST00000466285 C7orf77A4D0Y5 90 aa12.7□□□□□ -0.38
COL6A1-203ENST00000466285 CAMPP49913 170 aa12.7□□□□□ -0.38
COL6A1-203ENST00000466285 SPINK6Q6UWN8 80 aa12.7□□□□□ -0.38
COL6A1-203ENST00000466285 SEC11CQ9BY50 192 aa12.7□□□□□ -0.38
COL6A1-203ENST00000466285 A0A1B0GUT8 65 aa12.69□□□□□ -0.38
COL6A1-203ENST00000466285 PNRC1Q12796 327 aaPredicted RBP12.69□□□□□ -0.38
COL6A1-203ENST00000466285 GAGE2BQ13066 116 aa12.69□□□□□ -0.38
COL6A1-203ENST00000466285 SS18Q15532 418 aa12.69□□□□□ -0.38
COL6A1-203ENST00000466285 Q6ZUT4 128 aa12.69□□□□□ -0.38
COL6A1-203ENST00000466285 NRACQ8N912 160 aa12.69□□□□□ -0.38
COL6A1-203ENST00000466285 V9GYV3 84 aa12.69□□□□□ -0.38
COL6A1-203ENST00000466285 ADIRFQ15847 76 aa12.68□□□□□ -0.38
COL6A1-203ENST00000466285 TSKUQ8WUA8 353 aa12.68□□□□□ -0.38
COL6A1-203ENST00000466285 CARHSP1Q9Y2V2 147 aaKnown RBP12.68□□□□□ -0.38
COL6A1-203ENST00000466285 ZNF561-AS1K7EIQ3 104 aa12.67□□□□□ -0.38
COL6A1-203ENST00000466285 LINC00474Q9P2X8 69 aa12.67□□□□□ -0.38
COL6A1-203ENST00000466285 UBE2D4Q9Y2X8 147 aa12.67□□□□□ -0.38
COL6A1-203ENST00000466285 Q6ZRP5 223 aa12.66□□□□□ -0.38
COL6A1-203ENST00000466285 NUP35Q8NFH5 326 aa12.66□□□□□ -0.38
COL6A1-203ENST00000466285 F8W036 122 aa12.65□□□□□ -0.38
COL6A1-203ENST00000466285 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.65□□□□□ -0.38
COL6A1-203ENST00000466285 BORCS7Q96B45 105 aa12.65□□□□□ -0.38
COL6A1-203ENST00000466285 C5orf38Q86SI9 138 aa12.64□□□□□ -0.39
COL6A1-203ENST00000466285 FAM104AQ969W3 186 aa12.64□□□□□ -0.39
COL6A1-203ENST00000466285 TRAV13-1A0A0B4J241 112 aa12.63□□□□□ -0.39
COL6A1-203ENST00000466285 LOC107984640A0A0U1RRK4 108 aa12.63□□□□□ -0.39
COL6A1-203ENST00000466285 COX7A2LO14548 114 aa12.63□□□□□ -0.39
COL6A1-203ENST00000466285 REG3GQ6UW15 175 aa12.63□□□□□ -0.39
COL6A1-203ENST00000466285 PHF5AQ7RTV0 110 aaKnown RBP12.63□□□□□ -0.39
COL6A1-203ENST00000466285 PSORS1C2Q9UIG4 136 aa12.63□□□□□ -0.39
COL6A1-203ENST00000466285 KRTAP11-1Q8IUC1 163 aa12.62□□□□□ -0.39
COL6A1-203ENST00000466285 CAMK2N2Q96S95 79 aa12.62□□□□□ -0.39
COL6A1-203ENST00000466285 OPRPNQ99935 248 aaPredicted RBP12.62□□□□□ -0.39
COL6A1-203ENST00000466285 MALP21145 153 aa12.61□□□□□ -0.39
COL6A1-203ENST00000466285 FCER1GP30273 86 aa12.61□□□□□ -0.39
COL6A1-203ENST00000466285 SUMO2P61956 95 aaKnown RBP12.61□□□□□ -0.39
COL6A1-203ENST00000466285 RPL18AQ02543 176 aaKnown RBP12.61□□□□□ -0.39
COL6A1-203ENST00000466285 NDUFA5Q16718 116 aa12.61□□□□□ -0.39
COL6A1-203ENST00000466285 MRPL51Q4U2R6 128 aaKnown RBP12.61□□□□□ -0.39
COL6A1-203ENST00000466285 C9orf116Q5BN46 136 aaPredicted RBP12.61□□□□□ -0.39
COL6A1-203ENST00000466285 SMIM27A0A1W2PRY6 76 aa12.6□□□□□ -0.39
COL6A1-203ENST00000466285 APOMO95445 188 aa12.6□□□□□ -0.39
COL6A1-203ENST00000466285 SLC7A5P1Q8MH63 180 aa12.6□□□□□ -0.39
COL6A1-203ENST00000466285 PKIGQ9Y2B9 76 aa12.6□□□□□ -0.39
COL6A1-203ENST00000466285 C1orf196B1AJZ1 125 aa12.59□□□□□ -0.39
COL6A1-203ENST00000466285 VCYO14598 125 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms