RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 DPH3Q96FX2 82 aa12.06□□□□□ -0.48
VARS-220ENST00000461874 NAT8BQ9UHF3 227 aa12.06□□□□□ -0.48
VARS-220ENST00000461874 FAT3Q8TDW7 4589 aa12.06□□□□□ -0.48
VARS-220ENST00000461874 GVQW2A0A096LPI5 108 aaPredicted RBP12.05□□□□□ -0.48
VARS-220ENST00000461874 LINC00959A0A1B0GUT2 108 aa12.05□□□□□ -0.48
VARS-220ENST00000461874 SMKR1H3BMG3 65 aa12.05□□□□□ -0.48
VARS-220ENST00000461874 ADIRFQ15847 76 aa12.05□□□□□ -0.48
VARS-220ENST00000461874 MRPL52Q86TS9 123 aaKnown RBP12.05□□□□□ -0.48
VARS-220ENST00000461874 SPACA4Q8TDM5 124 aa12.05□□□□□ -0.48
VARS-220ENST00000461874 NAT8Q9UHE5 227 aa12.05□□□□□ -0.48
VARS-220ENST00000461874 A0A087WYN8 130 aa12.04□□□□□ -0.48
VARS-220ENST00000461874 VCYO14598 125 aa12.04□□□□□ -0.48
VARS-220ENST00000461874 PPP1R17O96001 155 aa12.04□□□□□ -0.48
VARS-220ENST00000461874 XCL1P47992 114 aa12.04□□□□□ -0.48
VARS-220ENST00000461874 HNRNPA3P51991 378 aaKnown RBP12.04□□□□□ -0.48
VARS-220ENST00000461874 CDC42SE2Q9NRR3 84 aa12.04□□□□□ -0.48
VARS-220ENST00000461874 C7orf77A4D0Y5 90 aa12.03□□□□□ -0.48
VARS-220ENST00000461874 CCL25O15444 150 aa12.03□□□□□ -0.48
VARS-220ENST00000461874 SRSF3P84103 164 aaKnown RBP12.03□□□□□ -0.48
VARS-220ENST00000461874 COX6A2Q02221 97 aa12.03□□□□□ -0.48
VARS-220ENST00000461874 PEA15Q15121 130 aa12.03□□□□□ -0.48
VARS-220ENST00000461874 NRACQ8N912 160 aa12.03□□□□□ -0.48
VARS-220ENST00000461874 SMIM27A0A1W2PRY6 76 aa12.02□□□□□ -0.49
VARS-220ENST00000461874 ZNF664Q8N3J9 261 aa12.02□□□□□ -0.49
VARS-220ENST00000461874 FCER1GP30273 86 aa12.01□□□□□ -0.49
VARS-220ENST00000461874 SUMO2P61956 95 aaKnown RBP12.01□□□□□ -0.49
VARS-220ENST00000461874 SS18Q15532 418 aa12.01□□□□□ -0.49
VARS-220ENST00000461874 FAM104BQ5XKR9 115 aa12.01□□□□□ -0.49
VARS-220ENST00000461874 PRSS3P2Q8NHM4 247 aa12.01□□□□□ -0.49
VARS-220ENST00000461874 SMDT1Q9H4I9 107 aa12.01□□□□□ -0.49
VARS-220ENST00000461874 PLAC8Q9NZF1 115 aa12.01□□□□□ -0.49
VARS-220ENST00000461874 MRPL51Q4U2R6 128 aaKnown RBP12□□□□□ -0.49
VARS-220ENST00000461874 IGHV1-58A0A0C4DH39 117 aa11.99□□□□□ -0.49
VARS-220ENST00000461874 CAMPP49913 170 aa11.99□□□□□ -0.49
VARS-220ENST00000461874 CD164L2Q6UWJ8 174 aa11.99□□□□□ -0.49
VARS-220ENST00000461874 KIR2DL4Q99706 377 aa11.99□□□□□ -0.49
VARS-220ENST00000461874 A0A1B0GW15 77 aa11.98□□□□□ -0.49
VARS-220ENST00000461874 PPP1R2P9O14990 202 aa11.98□□□□□ -0.49
VARS-220ENST00000461874 CSDC2Q9Y534 153 aaKnown RBP11.98□□□□□ -0.49
VARS-220ENST00000461874 LINC00862A6NCI5 91 aa11.97□□□□□ -0.49
VARS-220ENST00000461874 MAJINQ3KP22 176 aa11.97□□□□□ -0.49
VARS-220ENST00000461874 UBE2D4Q9Y2X8 147 aa11.97□□□□□ -0.49
VARS-220ENST00000461874 TRBV24-1A0A075B6N3 115 aa11.96□□□□□ -0.49
VARS-220ENST00000461874 IGKV2-24A0A0C4DH68 120 aa11.96□□□□□ -0.49
VARS-220ENST00000461874 SMAGPQ0VAQ4 97 aa11.96□□□□□ -0.49
VARS-220ENST00000461874 LINC00526Q96FQ7 95 aa11.96□□□□□ -0.49
VARS-220ENST00000461874 C20orf78Q9BR46 151 aa11.96□□□□□ -0.49
VARS-220ENST00000461874 C1orf196B1AJZ1 125 aa11.95□□□□□ -0.5
VARS-220ENST00000461874 CKS2P33552 79 aa11.95□□□□□ -0.5
VARS-220ENST00000461874 RPL32P62910 135 aaKnown RBP11.94□□□□□ -0.5
VARS-220ENST00000461874 SERTAD4-AS1Q5TG53 156 aa11.94□□□□□ -0.5
VARS-220ENST00000461874 A0A096LNI7 61 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 ZNF561-AS1K7EIQ3 104 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 PHOX2AO14813 284 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 S100A8P05109 93 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 RNASE13Q5GAN3 156 aaKnown RBP11.93□□□□□ -0.5
VARS-220ENST00000461874 MRPL54Q6P161 138 aaKnown RBP11.93□□□□□ -0.5
VARS-220ENST00000461874 Q6ZRU5 148 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 STPG4Q8N801 248 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 C7orf33Q8WU49 177 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 CARD19Q96LW7 228 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 TIMM21Q9BVV7 248 aa11.93□□□□□ -0.5
VARS-220ENST00000461874 A0A1B0GXF2 115 aa11.92□□□□□ -0.5
VARS-220ENST00000461874 TNFRSF6BO95407 300 aa11.92□□□□□ -0.5
VARS-220ENST00000461874 HBBP68871 147 aa11.92□□□□□ -0.5
VARS-220ENST00000461874 SYCNQ0VAF6 134 aa11.92□□□□□ -0.5
VARS-220ENST00000461874 TMEM18Q96B42 140 aa11.92□□□□□ -0.5
VARS-220ENST00000461874 LINC00474Q9P2X8 69 aa11.92□□□□□ -0.5
VARS-220ENST00000461874 PKIGQ9Y2B9 76 aa11.92□□□□□ -0.5
VARS-220ENST00000461874 TRAV13-1A0A0B4J241 112 aa11.91□□□□□ -0.5
VARS-220ENST00000461874 F8W036 122 aa11.91□□□□□ -0.5
VARS-220ENST00000461874 COX7A2LO14548 114 aa11.91□□□□□ -0.5
VARS-220ENST00000461874 TCAPO15273 167 aa11.91□□□□□ -0.5
VARS-220ENST00000461874 Q6ZUT4 128 aa11.91□□□□□ -0.5
VARS-220ENST00000461874 D6R8Y8 96 aa11.9□□□□□ -0.5
VARS-220ENST00000461874 MALP21145 153 aa11.9□□□□□ -0.5
VARS-220ENST00000461874 SMIM2Q9BVW6 85 aa11.9□□□□□ -0.5
VARS-220ENST00000461874 HMCN2Q8NDA2 5059 aa11.89□□□□□ -0.51
VARS-220ENST00000461874 IGLV4-69A0A075B6H9 119 aa11.89□□□□□ -0.51
VARS-220ENST00000461874 NPYP01303 97 aa11.88□□□□□ -0.51
VARS-220ENST00000461874 PPBPP02775 128 aa11.88□□□□□ -0.51
VARS-220ENST00000461874 RPL39P62891 51 aaKnown RBP11.88□□□□□ -0.51
VARS-220ENST00000461874 MT1HL1P0DM35 61 aa11.87□□□□□ -0.51
VARS-220ENST00000461874 FAM104AQ969W3 186 aa11.87□□□□□ -0.51
VARS-220ENST00000461874 ATP5L2Q7Z4Y8 100 aa11.86□□□□□ -0.51
VARS-220ENST00000461874 C5orf38Q86SI9 138 aa11.86□□□□□ -0.51
VARS-220ENST00000461874 SPANXA1Q9NS26 97 aa11.86□□□□□ -0.51
VARS-220ENST00000461874 PRR3P79522 188 aaKnown RBP11.85□□□□□ -0.51
VARS-220ENST00000461874 LOC107984640A0A0U1RRK4 108 aa11.84□□□□□ -0.51
VARS-220ENST00000461874 APOMO95445 188 aa11.84□□□□□ -0.51
VARS-220ENST00000461874 PTTG1IPP53801 180 aa11.84□□□□□ -0.51
VARS-220ENST00000461874 MRPS36P82909 103 aaKnown RBP11.84□□□□□ -0.51
VARS-220ENST00000461874 TMEM136Q6ZRR5 245 aa11.84□□□□□ -0.51
VARS-220ENST00000461874 ORMDL3Q8N138 153 aa11.84□□□□□ -0.51
VARS-220ENST00000461874 C2orf48Q96LS8 159 aa11.84□□□□□ -0.51
VARS-220ENST00000461874 CAMK2N2Q96S95 79 aa11.84□□□□□ -0.51
VARS-220ENST00000461874 OPRPNQ99935 248 aaPredicted RBP11.83□□□□□ -0.52
VARS-220ENST00000461874 GAGE2BQ13066 116 aa11.82□□□□□ -0.52
VARS-220ENST00000461874 PRELID3AQ96N28 172 aa11.82□□□□□ -0.52
VARS-220ENST00000461874 PNRC1Q12796 327 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms