RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ISOC2Q96AB3 205 aa12.43□□□□□ -0.42
LIME1-201ENST00000309546 CCL25O15444 150 aa12.42□□□□□ -0.42
LIME1-201ENST00000309546 POLR2KP53803 58 aaKnown RBP12.42□□□□□ -0.42
LIME1-201ENST00000309546 RPL23P62829 140 aaKnown RBP12.42□□□□□ -0.42
LIME1-201ENST00000309546 COX6A2Q02221 97 aa12.42□□□□□ -0.42
LIME1-201ENST00000309546 TMEM241Q24JQ0 296 aa12.42□□□□□ -0.42
LIME1-201ENST00000309546 GVQW2A0A096LPI5 108 aaPredicted RBP12.41□□□□□ -0.42
LIME1-201ENST00000309546 TRBV27A0A0K0K1C4 114 aa12.41□□□□□ -0.42
LIME1-201ENST00000309546 LINC00959A0A1B0GUT2 108 aa12.41□□□□□ -0.42
LIME1-201ENST00000309546 C7orf77A4D0Y5 90 aa12.41□□□□□ -0.42
LIME1-201ENST00000309546 FAM74A3Q4VXF1 159 aa12.41□□□□□ -0.42
LIME1-201ENST00000309546 IGKV2-24A0A0C4DH68 120 aa12.4□□□□□ -0.42
LIME1-201ENST00000309546 FCER1GP30273 86 aa12.4□□□□□ -0.42
LIME1-201ENST00000309546 NAT8BQ9UHF3 227 aa12.4□□□□□ -0.42
LIME1-201ENST00000309546 SS18Q15532 418 aa12.39□□□□□ -0.43
LIME1-201ENST00000309546 NAT8Q9UHE5 227 aa12.39□□□□□ -0.43
LIME1-201ENST00000309546 C9JQL5 133 aa12.38□□□□□ -0.43
LIME1-201ENST00000309546 MAJINQ3KP22 176 aa12.38□□□□□ -0.43
LIME1-201ENST00000309546 MRPL52Q86TS9 123 aaKnown RBP12.38□□□□□ -0.43
LIME1-201ENST00000309546 PRSS3P2Q8NHM4 247 aa12.38□□□□□ -0.43
LIME1-201ENST00000309546 CDC42SE2Q9NRR3 84 aa12.38□□□□□ -0.43
LIME1-201ENST00000309546 IGHV1-58A0A0C4DH39 117 aa12.37□□□□□ -0.43
LIME1-201ENST00000309546 VCYO14598 125 aa12.37□□□□□ -0.43
LIME1-201ENST00000309546 PPP1R17O96001 155 aa12.37□□□□□ -0.43
LIME1-201ENST00000309546 SUMO2P61956 95 aaKnown RBP12.37□□□□□ -0.43
LIME1-201ENST00000309546 SRSF3P84103 164 aaKnown RBP12.37□□□□□ -0.43
LIME1-201ENST00000309546 ZNF664Q8N3J9 261 aa12.37□□□□□ -0.43
LIME1-201ENST00000309546 NRACQ8N912 160 aa12.37□□□□□ -0.43
LIME1-201ENST00000309546 LINC00526Q96FQ7 95 aa12.37□□□□□ -0.43
LIME1-201ENST00000309546 CAMPP49913 170 aa12.36□□□□□ -0.43
LIME1-201ENST00000309546 PEA15Q15121 130 aa12.36□□□□□ -0.43
LIME1-201ENST00000309546 PLAC8Q9NZF1 115 aa12.36□□□□□ -0.43
LIME1-201ENST00000309546 MRPL51Q4U2R6 128 aaKnown RBP12.35□□□□□ -0.43
LIME1-201ENST00000309546 KIR2DL4Q99706 377 aa12.35□□□□□ -0.43
LIME1-201ENST00000309546 SMIM27A0A1W2PRY6 76 aa12.34□□□□□ -0.43
LIME1-201ENST00000309546 PHOX2AO14813 284 aa12.34□□□□□ -0.43
LIME1-201ENST00000309546 PPP1R2P9O14990 202 aa12.34□□□□□ -0.43
LIME1-201ENST00000309546 RNASE13Q5GAN3 156 aaKnown RBP12.34□□□□□ -0.43
LIME1-201ENST00000309546 FAM104BQ5XKR9 115 aa12.34□□□□□ -0.43
LIME1-201ENST00000309546 CD164L2Q6UWJ8 174 aa12.34□□□□□ -0.43
LIME1-201ENST00000309546 C7orf33Q8WU49 177 aa12.34□□□□□ -0.43
LIME1-201ENST00000309546 CARD19Q96LW7 228 aa12.34□□□□□ -0.43
LIME1-201ENST00000309546 A0A096LNI7 61 aa12.33□□□□□ -0.44
LIME1-201ENST00000309546 SMAGPQ0VAQ4 97 aa12.33□□□□□ -0.44
LIME1-201ENST00000309546 SERTAD4-AS1Q5TG53 156 aa12.33□□□□□ -0.44
LIME1-201ENST00000309546 STPG4Q8N801 248 aa12.33□□□□□ -0.44
LIME1-201ENST00000309546 UBE2D4Q9Y2X8 147 aa12.33□□□□□ -0.44
LIME1-201ENST00000309546 ZNF561-AS1K7EIQ3 104 aa12.32□□□□□ -0.44
LIME1-201ENST00000309546 MALP21145 153 aa12.31□□□□□ -0.44
LIME1-201ENST00000309546 CKS2P33552 79 aa12.31□□□□□ -0.44
LIME1-201ENST00000309546 MRPL54Q6P161 138 aaKnown RBP12.31□□□□□ -0.44
LIME1-201ENST00000309546 TRAV13-1A0A0B4J241 112 aa12.3□□□□□ -0.44
LIME1-201ENST00000309546 A0A1B0GW15 77 aa12.3□□□□□ -0.44
LIME1-201ENST00000309546 Q6ZUT4 128 aa12.3□□□□□ -0.44
LIME1-201ENST00000309546 TMEM18Q96B42 140 aa12.3□□□□□ -0.44
LIME1-201ENST00000309546 PKIGQ9Y2B9 76 aa12.3□□□□□ -0.44
LIME1-201ENST00000309546 LINC00862A6NCI5 91 aa12.29□□□□□ -0.44
LIME1-201ENST00000309546 C1orf196B1AJZ1 125 aa12.29□□□□□ -0.44
LIME1-201ENST00000309546 SYCNQ0VAF6 134 aa12.29□□□□□ -0.44
LIME1-201ENST00000309546 Q6ZRU5 148 aa12.29□□□□□ -0.44
LIME1-201ENST00000309546 SMDT1Q9H4I9 107 aa12.29□□□□□ -0.44
LIME1-201ENST00000309546 CSDC2Q9Y534 153 aaKnown RBP12.29□□□□□ -0.44
LIME1-201ENST00000309546 COX7A2LO14548 114 aa12.28□□□□□ -0.44
LIME1-201ENST00000309546 HBBP68871 147 aa12.28□□□□□ -0.44
LIME1-201ENST00000309546 C20orf78Q9BR46 151 aa12.28□□□□□ -0.44
LIME1-201ENST00000309546 HMCN2Q8NDA2 5059 aa12.28□□□□□ -0.44
LIME1-201ENST00000309546 D6R8Y8 96 aa12.27□□□□□ -0.45
LIME1-201ENST00000309546 TNFRSF6BO95407 300 aa12.27□□□□□ -0.45
LIME1-201ENST00000309546 S100A8P05109 93 aa12.27□□□□□ -0.45
LIME1-201ENST00000309546 LINC00474Q9P2X8 69 aa12.27□□□□□ -0.45
LIME1-201ENST00000309546 IGLV4-69A0A075B6H9 119 aa12.26□□□□□ -0.45
LIME1-201ENST00000309546 TRBV24-1A0A075B6N3 115 aa12.26□□□□□ -0.45
LIME1-201ENST00000309546 F8W036 122 aa12.26□□□□□ -0.45
LIME1-201ENST00000309546 SMIM2Q9BVW6 85 aa12.26□□□□□ -0.45
LIME1-201ENST00000309546 RPL39P62891 51 aaKnown RBP12.25□□□□□ -0.45
LIME1-201ENST00000309546 PRR3P79522 188 aaKnown RBP12.25□□□□□ -0.45
LIME1-201ENST00000309546 C5orf38Q86SI9 138 aa12.25□□□□□ -0.45
LIME1-201ENST00000309546 TIMM21Q9BVV7 248 aa12.25□□□□□ -0.45
LIME1-201ENST00000309546 PLA2G2DQ9UNK4 145 aa12.25□□□□□ -0.45
LIME1-201ENST00000309546 A0A1B0GXF2 115 aa12.24□□□□□ -0.45
LIME1-201ENST00000309546 NPYP01303 97 aa12.24□□□□□ -0.45
LIME1-201ENST00000309546 RPL32P62910 135 aaKnown RBP12.24□□□□□ -0.45
LIME1-201ENST00000309546 TCAPO15273 167 aa12.23□□□□□ -0.45
LIME1-201ENST00000309546 GAGE2BQ13066 116 aa12.23□□□□□ -0.45
LIME1-201ENST00000309546 CAMK2N2Q96S95 79 aa12.23□□□□□ -0.45
LIME1-201ENST00000309546 MT1HL1P0DM35 61 aa12.22□□□□□ -0.45
LIME1-201ENST00000309546 LOC107984640A0A0U1RRK4 108 aa12.21□□□□□ -0.45
LIME1-201ENST00000309546 APOMO95445 188 aa12.21□□□□□ -0.45
LIME1-201ENST00000309546 PTTG1IPP53801 180 aa12.21□□□□□ -0.45
LIME1-201ENST00000309546 SPAG11BQ08648 103 aa12.2□□□□□ -0.46
LIME1-201ENST00000309546 OPRPNQ99935 248 aaPredicted RBP12.2□□□□□ -0.46
LIME1-201ENST00000309546 SPANXA1Q9NS26 97 aa12.2□□□□□ -0.46
LIME1-201ENST00000309546 PPBPP02775 128 aa12.19□□□□□ -0.46
LIME1-201ENST00000309546 ORMDL3Q8N138 153 aa12.19□□□□□ -0.46
LIME1-201ENST00000309546 ATP5L2Q7Z4Y8 100 aa12.18□□□□□ -0.46
LIME1-201ENST00000309546 C2orf48Q96LS8 159 aa12.18□□□□□ -0.46
LIME1-201ENST00000309546 PRELID3AQ96N28 172 aa12.18□□□□□ -0.46
LIME1-201ENST00000309546 IFITM10A6NMD0 228 aa12.17□□□□□ -0.46
LIME1-201ENST00000309546 RAB5AP20339 215 aa12.17□□□□□ -0.46
LIME1-201ENST00000309546 RPL18AQ02543 176 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms