RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PMCHP20382 165 aa9.12□□□□□ -0.95
CCDC88B-201ENST00000301897 CD164L2Q6UWJ8 174 aa9.12□□□□□ -0.95
CCDC88B-201ENST00000301897 TAGLN2P37802 199 aaKnown RBP9.11□□□□□ -0.95
CCDC88B-201ENST00000301897 CAMPP49913 170 aa9.11□□□□□ -0.95
CCDC88B-201ENST00000301897 ZNF664Q8N3J9 261 aa9.11□□□□□ -0.95
CCDC88B-201ENST00000301897 LINC00526Q96FQ7 95 aa9.11□□□□□ -0.95
CCDC88B-201ENST00000301897 MRAP2Q96G30 205 aa9.11□□□□□ -0.95
CCDC88B-201ENST00000301897 TRBV6-5A0A0K0K1A5 114 aa9.1□□□□□ -0.95
CCDC88B-201ENST00000301897 A0A1B0GVG6 124 aa9.1□□□□□ -0.95
CCDC88B-201ENST00000301897 IGLV4-69A0A075B6H9 119 aa9.09□□□□□ -0.95
CCDC88B-201ENST00000301897 MT-ND6P03923 174 aa9.09□□□□□ -0.95
CCDC88B-201ENST00000301897 BCL2P10415 239 aa9.09□□□□□ -0.95
CCDC88B-201ENST00000301897 ESDP10768 282 aa9.09□□□□□ -0.95
CCDC88B-201ENST00000301897 GAGE2BQ13066 116 aa9.09□□□□□ -0.95
CCDC88B-201ENST00000301897 MRPL52Q86TS9 123 aaKnown RBP9.09□□□□□ -0.95
CCDC88B-201ENST00000301897 RNASE7Q9H1E1 156 aaKnown RBP9.09□□□□□ -0.95
CCDC88B-201ENST00000301897 PSORS1C2Q9UIG4 136 aa9.09□□□□□ -0.95
CCDC88B-201ENST00000301897 MALP21145 153 aa9.08□□□□□ -0.96
CCDC88B-201ENST00000301897 FOXA3P55318 350 aaPredicted RBP9.08□□□□□ -0.96
CCDC88B-201ENST00000301897 SMAGPQ0VAQ4 97 aa9.08□□□□□ -0.96
CCDC88B-201ENST00000301897 OCC1Q8TAD7 63 aa9.08□□□□□ -0.96
CCDC88B-201ENST00000301897 ST20Q9HBF5 79 aa9.08□□□□□ -0.96
CCDC88B-201ENST00000301897 CDC42SE2Q9NRR3 84 aa9.08□□□□□ -0.96
CCDC88B-201ENST00000301897 C1orf196B1AJZ1 125 aa9.07□□□□□ -0.96
CCDC88B-201ENST00000301897 K7EN84 100 aa9.07□□□□□ -0.96
CCDC88B-201ENST00000301897 APOMO95445 188 aa9.07□□□□□ -0.96
CCDC88B-201ENST00000301897 A8MWL6 223 aa9.06□□□□□ -0.96
CCDC88B-201ENST00000301897 COX7A2LO14548 114 aa9.06□□□□□ -0.96
CCDC88B-201ENST00000301897 TSHBP01222 138 aa9.06□□□□□ -0.96
CCDC88B-201ENST00000301897 A0A1W2PNN7 141 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 C7orf77A4D0Y5 90 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 ALKAL2Q6UX46 152 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 NUP35Q8NFH5 326 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 TSKUQ8WUA8 353 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 DIRC1Q969H9 104 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 BORCS7Q96B45 105 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 C2orf48Q96LS8 159 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 CAMK2N2Q96S95 79 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 TMEM242Q9NWH2 141 aa9.05□□□□□ -0.96
CCDC88B-201ENST00000301897 TRBV27A0A0K0K1C4 114 aa9.04□□□□□ -0.96
CCDC88B-201ENST00000301897 GATCO43716 136 aaKnown RBP9.04□□□□□ -0.96
CCDC88B-201ENST00000301897 C9orf116Q5BN46 136 aaPredicted RBP9.04□□□□□ -0.96
CCDC88B-201ENST00000301897 POLR2KP53803 58 aaKnown RBP9.03□□□□□ -0.96
CCDC88B-201ENST00000301897 BLOC1S1P78537 153 aa9.03□□□□□ -0.96
CCDC88B-201ENST00000301897 C1orf137Q5JT78 98 aa9.03□□□□□ -0.96
CCDC88B-201ENST00000301897 FAM231DQ6ZW35 169 aa9.03□□□□□ -0.96
CCDC88B-201ENST00000301897 CSDC2Q9Y534 153 aaKnown RBP9.03□□□□□ -0.96
CCDC88B-201ENST00000301897 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.02□□□□□ -0.97
CCDC88B-201ENST00000301897 RPL18AQ02543 176 aaKnown RBP9.02□□□□□ -0.97
CCDC88B-201ENST00000301897 RNF151Q2KHN1 245 aa9.02□□□□□ -0.97
CCDC88B-201ENST00000301897 CT83Q5H943 113 aa9.02□□□□□ -0.97
CCDC88B-201ENST00000301897 PPP1R17O96001 155 aa9.01□□□□□ -0.97
CCDC88B-201ENST00000301897 FCER1GP30273 86 aa9.01□□□□□ -0.97
CCDC88B-201ENST00000301897 TMEM191AQ9H0A3 160 aa9.01□□□□□ -0.97
CCDC88B-201ENST00000301897 LPAP08519 4548 aa9□□□□□ -0.97
CCDC88B-201ENST00000301897 A0A1B0GUT8 65 aa9□□□□□ -0.97
CCDC88B-201ENST00000301897 F8WDY8 70 aa9□□□□□ -0.97
CCDC88B-201ENST00000301897 TMEM250H0YL14 139 aa9□□□□□ -0.97
CCDC88B-201ENST00000301897 VCYO14598 125 aa9□□□□□ -0.97
CCDC88B-201ENST00000301897 IGLV1-50A0A075B6I6 118 aa8.99□□□□□ -0.97
CCDC88B-201ENST00000301897 IGLV7-43P04211 117 aa8.99□□□□□ -0.97
CCDC88B-201ENST00000301897 PHF5AQ7RTV0 110 aaKnown RBP8.99□□□□□ -0.97
CCDC88B-201ENST00000301897 OR10D4PQ8NGN7 298 aa8.99□□□□□ -0.97
CCDC88B-201ENST00000301897 IMMP2LQ96T52 175 aa8.99□□□□□ -0.97
CCDC88B-201ENST00000301897 TRAV13-1A0A0B4J241 112 aa8.98□□□□□ -0.97
CCDC88B-201ENST00000301897 RAB4AP20338 218 aa8.98□□□□□ -0.97
CCDC88B-201ENST00000301897 SPAG11BQ08648 103 aa8.98□□□□□ -0.97
CCDC88B-201ENST00000301897 PRR26Q8N8Z3 221 aa8.98□□□□□ -0.97
CCDC88B-201ENST00000301897 TMEM18Q96B42 140 aa8.98□□□□□ -0.97
CCDC88B-201ENST00000301897 KIR2DL4Q99706 377 aa8.98□□□□□ -0.97
CCDC88B-201ENST00000301897 H0Y9J4 135 aa8.97□□□□□ -0.97
CCDC88B-201ENST00000301897 C5orf38Q86SI9 138 aa8.97□□□□□ -0.97
CCDC88B-201ENST00000301897 TIMM21Q9BVV7 248 aa8.97□□□□□ -0.97
CCDC88B-201ENST00000301897 MRPL35Q9NZE8 188 aaKnown RBP8.97□□□□□ -0.97
CCDC88B-201ENST00000301897 UBE2D4Q9Y2X8 147 aa8.97□□□□□ -0.97
CCDC88B-201ENST00000301897 A0A087WZ39 114 aa8.96□□□□□ -0.98
CCDC88B-201ENST00000301897 A0A0U1RQV1 116 aa8.96□□□□□ -0.98
CCDC88B-201ENST00000301897 PPP1R2P9O14990 202 aa8.96□□□□□ -0.98
CCDC88B-201ENST00000301897 OPRPNQ99935 248 aaPredicted RBP8.96□□□□□ -0.98
CCDC88B-201ENST00000301897 HIGD1CA8MV81 97 aa8.95□□□□□ -0.98
CCDC88B-201ENST00000301897 SUMO2P61956 95 aaKnown RBP8.95□□□□□ -0.98
CCDC88B-201ENST00000301897 NDUFA1O15239 70 aa8.94□□□□□ -0.98
CCDC88B-201ENST00000301897 TCAPO15273 167 aa8.94□□□□□ -0.98
CCDC88B-201ENST00000301897 RPL13AP40429 203 aaKnown RBP8.94□□□□□ -0.98
CCDC88B-201ENST00000301897 TMEM241Q24JQ0 296 aa8.94□□□□□ -0.98
CCDC88B-201ENST00000301897 RNASE13Q5GAN3 156 aaKnown RBP8.94□□□□□ -0.98
CCDC88B-201ENST00000301897 AMN1Q8IY45 258 aa8.94□□□□□ -0.98
CCDC88B-201ENST00000301897 SRP19P09132 144 aaKnown RBP8.93□□□□□ -0.98
CCDC88B-201ENST00000301897 TLX1NBP0CAT3 122 aa8.93□□□□□ -0.98
CCDC88B-201ENST00000301897 RIGQ13278 110 aa8.93□□□□□ -0.98
CCDC88B-201ENST00000301897 Q6ZUT4 128 aa8.93□□□□□ -0.98
CCDC88B-201ENST00000301897 ORAOV1Q8WV07 137 aa8.93□□□□□ -0.98
CCDC88B-201ENST00000301897 OSTCQ9NRP0 149 aa8.93□□□□□ -0.98
CCDC88B-201ENST00000301897 UBE2D1P51668 147 aa8.92□□□□□ -0.98
CCDC88B-201ENST00000301897 LINC01551Q86U37 167 aa8.92□□□□□ -0.98
CCDC88B-201ENST00000301897 NRACQ8N912 160 aa8.92□□□□□ -0.98
CCDC88B-201ENST00000301897 EIF5A2Q9GZV4 153 aaKnown RBP8.92□□□□□ -0.98
CCDC88B-201ENST00000301897 SMKR1H3BMG3 65 aa8.91□□□□□ -0.98
CCDC88B-201ENST00000301897 CEBPGP53567 150 aa8.91□□□□□ -0.98
CCDC88B-201ENST00000301897 PRR4Q16378 134 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 180.6 ms