RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 DDTLA6NHG4 134 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-215ENST00000554656 BCAR3O75815 825 aa13.09□□□□□ -0.31
SHMT2-215ENST00000554656 GNAI3P08754 354 aa13.09□□□□□ -0.31
SHMT2-215ENST00000554656 ANKRD23Q86SG2 305 aa13.09□□□□□ -0.31
SHMT2-215ENST00000554656 CPA4Q9UI42 421 aa13.09□□□□□ -0.31
SHMT2-215ENST00000554656 RCAN3Q9UKA8 241 aa13.09□□□□□ -0.31
SHMT2-215ENST00000554656 MROH7-TTC4A0A0A0MT08 1334 aa13.09□□□□□ -0.31
SHMT2-215ENST00000554656 FOCADQ5VW36 1801 aa13.09□□□□□ -0.31
SHMT2-215ENST00000554656 LOC285556D6RIA3 1793 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 PNMA6EA0A0J9YXQ4 647 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 PDHXO00330 501 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 ENTPD3O75355 529 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 ECM2O94769 699 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-215ENST00000554656 RHBDL3P58872 404 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 SLC9C1Q4G0N8 1177 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 GPAT2Q6NUI2 795 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 DZIP1Q86YF9 867 aaKnown RBP13.08□□□□□ -0.32
SHMT2-215ENST00000554656 SH3TC2Q8TF17 1288 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 FAM163AQ96GL9 167 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-215ENST00000554656 TRIM47Q96LD4 638 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-215ENST00000554656 ABCF2Q9UG63 623 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 HDAC5Q9UQL6 1122 aa13.08□□□□□ -0.32
SHMT2-215ENST00000554656 DOCK3Q8IZD9 2030 aa13.07□□□□□ -0.32
SHMT2-215ENST00000554656 BTDP43251 543 aa13.07□□□□□ -0.32
SHMT2-215ENST00000554656 MAP3K10Q02779 954 aa13.07□□□□□ -0.32
SHMT2-215ENST00000554656 MECOMQ03112 1051 aa13.07□□□□□ -0.32
SHMT2-215ENST00000554656 ATF7IPQ6VMQ6 1270 aa13.07□□□□□ -0.32
SHMT2-215ENST00000554656 SCYL3Q8IZE3 742 aa13.07□□□□□ -0.32
SHMT2-215ENST00000554656 ZGPATQ8N5A5 531 aaKnown RBP13.07□□□□□ -0.32
SHMT2-215ENST00000554656 HMG20BQ9P0W2 317 aa13.07□□□□□ -0.32
SHMT2-215ENST00000554656 CEP290O15078 2479 aa13.06□□□□□ -0.32
SHMT2-215ENST00000554656 MYCP01106 439 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-215ENST00000554656 PTPRAP18433 802 aa13.06□□□□□ -0.32
SHMT2-215ENST00000554656 ARID4AP29374 1257 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-215ENST00000554656 MVPQ14764 893 aaKnown RBP13.06□□□□□ -0.32
SHMT2-215ENST00000554656 ARHGEF6Q15052 776 aa13.06□□□□□ -0.32
SHMT2-215ENST00000554656 TBC1D9Q6ZT07 1266 aa13.06□□□□□ -0.32
SHMT2-215ENST00000554656 CCDC84Q86UT8 332 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-215ENST00000554656 CLUAP1Q96AJ1 413 aa13.06□□□□□ -0.32
SHMT2-215ENST00000554656 AKAP2Q9Y2D5 859 aa13.06□□□□□ -0.32
SHMT2-215ENST00000554656 GPR75-ASB3A0A0A6YYF3 556 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 A0A0G2JLL6 359 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-215ENST00000554656 FAM196BA6NMK8 535 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 CXCL11O14625 94 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 CYP2C8P10632 490 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 BCRP11274 1271 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 OSBPP22059 807 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 MCAMP43121 646 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 PSMC4P43686 418 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 PICALMQ13492 652 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 KIF22Q14807 665 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 PRRT2Q7Z6L0 340 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-215ENST00000554656 FRAT1Q92837 279 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-215ENST00000554656 NEUROD6Q96NK8 337 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 AFG3L2Q9Y4W6 797 aa13.05□□□□□ -0.32
SHMT2-215ENST00000554656 COL2A1P02458 1487 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-215ENST00000554656 GNAI2P04899 355 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 MTFR1Q15390 333 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 SPTY2D1Q68D10 685 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-215ENST00000554656 ERICH6Q7L0X2 663 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 NBPF11Q86T75 865 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 ZSCAN29Q8IWY8 852 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-215ENST00000554656 TMEM57Q8N5G2 664 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 SPATA5Q8NB90 893 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 NSUN4Q96CB9 384 aaKnown RBP13.04□□□□□ -0.32
SHMT2-215ENST00000554656 SHISA4Q96DD7 197 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 TMEM106CQ9BVX2 250 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 SRRDQ9UH36 339 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 ZHX2Q9Y6X8 837 aa13.04□□□□□ -0.32
SHMT2-215ENST00000554656 IPO8O15397 1037 aaKnown RBP13.03□□□□□ -0.32
SHMT2-215ENST00000554656 GNRH1P01148 92 aa13.03□□□□□ -0.32
SHMT2-215ENST00000554656 RRP1P56182 461 aaKnown RBP13.03□□□□□ -0.32
SHMT2-215ENST00000554656 POLA2Q14181 598 aa13.03□□□□□ -0.32
SHMT2-215ENST00000554656 RRP1BQ14684 758 aaKnown RBP13.03□□□□□ -0.32
SHMT2-215ENST00000554656 SLC4A8Q2Y0W8 1093 aa13.03□□□□□ -0.32
SHMT2-215ENST00000554656 SLF2Q8IX21 1173 aa13.03□□□□□ -0.32
SHMT2-215ENST00000554656 PARK7Q99497 189 aaKnown RBP13.03□□□□□ -0.32
SHMT2-215ENST00000554656 PICK1Q9NRD5 415 aa13.03□□□□□ -0.32
SHMT2-215ENST00000554656 CTNND1O60716 968 aaKnown RBP13.02□□□□□ -0.33
SHMT2-215ENST00000554656 NPM3O75607 178 aaKnown RBP13.02□□□□□ -0.33
SHMT2-215ENST00000554656 PRMT2P55345 433 aa13.02□□□□□ -0.33
SHMT2-215ENST00000554656 PRKCZQ05513 592 aa13.02□□□□□ -0.33
SHMT2-215ENST00000554656 GADL1Q6ZQY3 521 aa13.02□□□□□ -0.33
SHMT2-215ENST00000554656 GABRQQ9UN88 632 aa13.02□□□□□ -0.33
SHMT2-215ENST00000554656 MYPNQ86TC9 1320 aa13.02□□□□□ -0.33
SHMT2-215ENST00000554656 PLXNB2O15031 1838 aa13.02□□□□□ -0.33
SHMT2-215ENST00000554656 TRIM75PA6NK02 468 aa13.01□□□□□ -0.33
SHMT2-215ENST00000554656 FMNL1O95466 1100 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-215ENST00000554656 RLBP1P12271 317 aa13.01□□□□□ -0.33
SHMT2-215ENST00000554656 G3BP1Q13283 466 aaKnown RBP eCLIP13.01□□□□□ -0.338e-8■■■□□ 16.6
SHMT2-215ENST00000554656 SSH3Q8TE77 659 aa13.01□□□□□ -0.33
SHMT2-215ENST00000554656 DBNDD2Q9BQY9 259 aa13.01□□□□□ -0.33
SHMT2-215ENST00000554656 OSBPL5Q9H0X9 879 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-215ENST00000554656 C1orf115Q9H7X2 142 aa13.01□□□□□ -0.33
SHMT2-215ENST00000554656 SNRKQ9NRH2 765 aa13.01□□□□□ -0.33
SHMT2-215ENST00000554656 TBC1D12O60347 775 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 GRK4P32298 578 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 TNNI3KQ59H18 835 aa13□□□□□ -0.33
SHMT2-215ENST00000554656 HABP4Q5JVS0 413 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms