RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 G3BP1Q13283 466 aaKnown RBP eCLIP19.4■□□□□ 0.7
SMPD4-220ENST00000491319 ERICH6Q7L0X2 663 aa19.4■□□□□ 0.7
SMPD4-220ENST00000491319 SH3BP5LQ7L8J4 393 aa19.4■□□□□ 0.7
SMPD4-220ENST00000491319 SLF2Q8IX21 1173 aa19.4■□□□□ 0.7
SMPD4-220ENST00000491319 ARMC5Q96C12 935 aa19.4■□□□□ 0.7
SMPD4-220ENST00000491319 ARHGAP39Q9C0H5 1083 aa19.4■□□□□ 0.7
SMPD4-220ENST00000491319 MKI67P46013 3256 aaKnown RBP19.4■□□□□ 0.7
SMPD4-220ENST00000491319 DDTLA6NHG4 134 aaPredicted RBP19.39■□□□□ 0.69
SMPD4-220ENST00000491319 SLURP2P0DP57 97 aa19.39■□□□□ 0.69
SMPD4-220ENST00000491319 ARID4AP29374 1257 aaPredicted RBP19.39■□□□□ 0.69
SMPD4-220ENST00000491319 PICALMQ13492 652 aa19.39■□□□□ 0.69
SMPD4-220ENST00000491319 GORABQ5T7V8 394 aa19.39■□□□□ 0.69
SMPD4-220ENST00000491319 ZSCAN29Q8IWY8 852 aaPredicted RBP19.39■□□□□ 0.69
SMPD4-220ENST00000491319 SPATA5Q8NB90 893 aa19.39■□□□□ 0.69
SMPD4-220ENST00000491319 FAM163AQ96GL9 167 aaPredicted RBP19.39■□□□□ 0.69
SMPD4-220ENST00000491319 PTCH2Q9Y6C5 1203 aa19.39■□□□□ 0.69
SMPD4-220ENST00000491319 PHF20L1A8MW92 1017 aa19.38■□□□□ 0.69
SMPD4-220ENST00000491319 MCAMP43121 646 aa19.38■□□□□ 0.69
SMPD4-220ENST00000491319 LACTBP83111 547 aaPredicted RBP19.38■□□□□ 0.69
SMPD4-220ENST00000491319 MOGSQ13724 837 aa19.38■□□□□ 0.69
SMPD4-220ENST00000491319 TBC1D9Q6ZT07 1266 aa19.38■□□□□ 0.69
SMPD4-220ENST00000491319 ANKRD23Q86SG2 305 aa19.38■□□□□ 0.69
SMPD4-220ENST00000491319 C1orf115Q9H7X2 142 aa19.38■□□□□ 0.69
SMPD4-220ENST00000491319 ADGRA2Q96PE1 1338 aa19.37■□□□□ 0.69
SMPD4-220ENST00000491319 GPR75-ASB3A0A0A6YYF3 556 aa19.37■□□□□ 0.69
SMPD4-220ENST00000491319 PDHXO00330 501 aa19.37■□□□□ 0.69
SMPD4-220ENST00000491319 RHBDL3P58872 404 aa19.37■□□□□ 0.69
SMPD4-220ENST00000491319 POLA2Q14181 598 aa19.37■□□□□ 0.69
SMPD4-220ENST00000491319 ARHGEF6Q15052 776 aa19.37■□□□□ 0.69
SMPD4-220ENST00000491319 SCYL3Q8IZE3 742 aa19.37■□□□□ 0.69
SMPD4-220ENST00000491319 ECM2O94769 699 aaPredicted RBP19.36■□□□□ 0.69
SMPD4-220ENST00000491319 SLC34A2O95436 690 aa19.36■□□□□ 0.69
SMPD4-220ENST00000491319 RLBP1P12271 317 aa19.36■□□□□ 0.69
SMPD4-220ENST00000491319 SLC9C1Q4G0N8 1177 aa19.36■□□□□ 0.69
SMPD4-220ENST00000491319 PRPF38BQ5VTL8 546 aaKnown RBP19.36■□□□□ 0.69
SMPD4-220ENST00000491319 FTSJ3Q8IY81 847 aaKnown RBP19.36■□□□□ 0.69
SMPD4-220ENST00000491319 NSUN4Q96CB9 384 aaKnown RBP19.36■□□□□ 0.69
SMPD4-220ENST00000491319 CPA4Q9UI42 421 aa19.36■□□□□ 0.69
SMPD4-220ENST00000491319 LOC285556D6RIA3 1793 aa19.36■□□□□ 0.69
SMPD4-220ENST00000491319 MAP3K10Q02779 954 aa19.35■□□□□ 0.69
SMPD4-220ENST00000491319 KIF22Q14807 665 aa19.35■□□□□ 0.69
SMPD4-220ENST00000491319 C17orf99Q6UX52 265 aa19.35■□□□□ 0.69
SMPD4-220ENST00000491319 ITPRIPQ8IWB1 547 aa19.35■□□□□ 0.69
SMPD4-220ENST00000491319 SSH3Q8TE77 659 aa19.35■□□□□ 0.69
SMPD4-220ENST00000491319 ZNF333Q96JL9 665 aa19.35■□□□□ 0.69
SMPD4-220ENST00000491319 RAI14Q9P0K7 980 aa19.35■□□□□ 0.69
SMPD4-220ENST00000491319 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.35■□□□□ 0.69
SMPD4-220ENST00000491319 DOCK3Q8IZD9 2030 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 UQCRFS1P1P0C7P4 283 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 PTPRAP18433 802 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 CTGFP29279 349 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 GSTO1P78417 241 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 OS9Q13438 667 aaPredicted RBP19.34■□□□□ 0.69
SMPD4-220ENST00000491319 TNNI3KQ59H18 835 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 DIEXFQ68CQ4 756 aaKnown RBP19.34■□□□□ 0.69
SMPD4-220ENST00000491319 PICK1Q9NRD5 415 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 ZHX2Q9Y6X8 837 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 FPGT-TNNI3KV9GXZ4 949 aa19.34■□□□□ 0.69
SMPD4-220ENST00000491319 COL2A1P02458 1487 aaPredicted RBP19.34■□□□□ 0.69
SMPD4-220ENST00000491319 MYH1P12882 1939 aa19.33■□□□□ 0.69
SMPD4-220ENST00000491319 FAM196BA6NMK8 535 aa19.33■□□□□ 0.68
SMPD4-220ENST00000491319 CXCL11O14625 94 aa19.33■□□□□ 0.68
SMPD4-220ENST00000491319 ATP8B2P98198 1209 aa19.33■□□□□ 0.68
SMPD4-220ENST00000491319 GPAT2Q6NUI2 795 aa19.33■□□□□ 0.68
SMPD4-220ENST00000491319 DBNDD2Q9BQY9 259 aa19.33■□□□□ 0.68
SMPD4-220ENST00000491319 SNRKQ9NRH2 765 aa19.33■□□□□ 0.68
SMPD4-220ENST00000491319 A0A0G2JLL6 359 aaPredicted RBP19.32■□□□□ 0.68
SMPD4-220ENST00000491319 LDHCP07864 332 aa19.32■□□□□ 0.68
SMPD4-220ENST00000491319 EN2P19622 333 aaPredicted RBP19.32■□□□□ 0.68
SMPD4-220ENST00000491319 TTC39AQ5SRH9 613 aa19.32■□□□□ 0.68
SMPD4-220ENST00000491319 PRRT2Q7Z6L0 340 aaPredicted RBP19.32■□□□□ 0.68
SMPD4-220ENST00000491319 CCDC84Q86UT8 332 aaPredicted RBP19.32■□□□□ 0.68
SMPD4-220ENST00000491319 PARK7Q99497 189 aaKnown RBP19.32■□□□□ 0.68
SMPD4-220ENST00000491319 GPR108Q9NPR9 543 aa19.32■□□□□ 0.68
SMPD4-220ENST00000491319 LRP2BPQ9P2M1 347 aa19.32■□□□□ 0.68
SMPD4-220ENST00000491319 AFG3L2Q9Y4W6 797 aa19.32■□□□□ 0.68
SMPD4-220ENST00000491319 CTNND1O60716 968 aaKnown RBP19.31■□□□□ 0.68
SMPD4-220ENST00000491319 NPM3O75607 178 aaKnown RBP19.31■□□□□ 0.68
SMPD4-220ENST00000491319 SURF6O75683 361 aaKnown RBP19.31■□□□□ 0.68
SMPD4-220ENST00000491319 MYCP01106 439 aaPredicted RBP19.31■□□□□ 0.68
SMPD4-220ENST00000491319 CYP2C8P10632 490 aa19.31■□□□□ 0.68
SMPD4-220ENST00000491319 GADL1Q6ZQY3 521 aa19.31■□□□□ 0.68
SMPD4-220ENST00000491319 NBPF11Q86T75 865 aa19.31■□□□□ 0.68
SMPD4-220ENST00000491319 SH3TC2Q8TF17 1288 aa19.31■□□□□ 0.68
SMPD4-220ENST00000491319 TRIM47Q96LD4 638 aa19.31■□□□□ 0.68
SMPD4-220ENST00000491319 OSBPL5Q9H0X9 879 aaPredicted RBP19.31■□□□□ 0.68
SMPD4-220ENST00000491319 ZBED9Q6R2W3 1325 aa19.3■□□□□ 0.68
SMPD4-220ENST00000491319 ZBTB7BO15156 539 aaPredicted RBP19.3■□□□□ 0.68
SMPD4-220ENST00000491319 GNRH1P01148 92 aa19.3■□□□□ 0.68
SMPD4-220ENST00000491319 PSMC4P43686 418 aa19.3■□□□□ 0.68
SMPD4-220ENST00000491319 TEX11Q8IYF3 940 aa19.3■□□□□ 0.68
SMPD4-220ENST00000491319 TMEM106CQ9BVX2 250 aa19.3■□□□□ 0.68
SMPD4-220ENST00000491319 TRIM75PA6NK02 468 aa19.29■□□□□ 0.68
SMPD4-220ENST00000491319 TBC1D12O60347 775 aa19.29■□□□□ 0.68
SMPD4-220ENST00000491319 MAP4K4O95819 1239 aaPredicted RBP19.29■□□□□ 0.68
SMPD4-220ENST00000491319 BCRP11274 1271 aa19.29■□□□□ 0.68
SMPD4-220ENST00000491319 CCDC158Q5M9N0 1113 aa19.29■□□□□ 0.68
SMPD4-220ENST00000491319 FASTKD5Q7L8L6 764 aaKnown RBP19.29■□□□□ 0.68
SMPD4-220ENST00000491319 SH3RF3Q8TEJ3 882 aaPredicted RBP19.29■□□□□ 0.68
SMPD4-220ENST00000491319 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms