RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 CCDC93Q567U6 631 aa19.27■□□□□ 0.67
TPM1-201ENST00000267996 DCAF8Q5TAQ9 597 aa19.27■□□□□ 0.67
TPM1-201ENST00000267996 SMARCC2Q8TAQ2 1214 aa19.27■□□□□ 0.67
TPM1-201ENST00000267996 DBNDD1Q9H9R9 158 aa19.27■□□□□ 0.67
TPM1-201ENST00000267996 LAMB1P07942 1786 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 CYP2D7A0A087X1C5 515 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 SMIM22K7EJ46 135 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 STX6O43752 255 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 PLCG2P16885 1265 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 LIFRP42702 1097 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 STRIP1Q5VSL9 837 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 SGMS1Q86VZ5 419 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 RTKN2Q8IZC4 609 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 HPS5Q9UPZ3 1129 aa19.26■□□□□ 0.67
TPM1-201ENST00000267996 ATF5Q9Y2D1 282 aaPredicted RBP19.26■□□□□ 0.67
TPM1-201ENST00000267996 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.26■□□□□ 0.67
TPM1-201ENST00000267996 ZNF646O15015 1829 aaPredicted RBP19.26■□□□□ 0.67
TPM1-201ENST00000267996 KLF18A0A0U1RQI7 1052 aa19.25■□□□□ 0.67
TPM1-201ENST00000267996 DDX11L8A8MPP1 907 aa19.25■□□□□ 0.67
TPM1-201ENST00000267996 ECE2O60344 883 aa19.25■□□□□ 0.67
TPM1-201ENST00000267996 RHBDL3P58872 404 aa19.25■□□□□ 0.67
TPM1-201ENST00000267996 R3HDM1Q15032 1099 aaKnown RBP19.25■□□□□ 0.67
TPM1-201ENST00000267996 PSMD1Q99460 953 aa19.25■□□□□ 0.67
TPM1-201ENST00000267996 LY9Q9HBG7 655 aa19.25■□□□□ 0.67
TPM1-201ENST00000267996 SCN9AQ15858 1988 aa19.25■□□□□ 0.67
TPM1-201ENST00000267996 ORC4O43929 436 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 CTDNEP1O95476 244 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 PDCP20941 246 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 USP5P45974 858 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 NSUN7Q8NE18 718 aaKnown RBP19.24■□□□□ 0.67
TPM1-201ENST00000267996 SGIP1Q9BQI5 828 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 DAGLAQ9Y4D2 1042 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 CDK5RAP2Q96SN8 1893 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 JAK2O60674 1132 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 ZSCAN22P10073 491 aaPredicted RBP19.24■□□□□ 0.67
TPM1-201ENST00000267996 AOC3Q16853 763 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 TMEM67Q5HYA8 995 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 DACT2Q5SW24 774 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 C12orf60Q5U649 245 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 ESR2Q92731 530 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 FBXW7Q969H0 707 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 MRIQ9BWK5 157 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 KCNQ5Q9NR82 932 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 MTMR6Q9Y217 621 aa19.24■□□□□ 0.67
TPM1-201ENST00000267996 IFIT3O14879 490 aaKnown RBP19.23■□□□□ 0.67
TPM1-201ENST00000267996 DTNBO60941 627 aa19.23■□□□□ 0.67
TPM1-201ENST00000267996 CYP2D6P10635 497 aa19.23■□□□□ 0.67
TPM1-201ENST00000267996 NT5C2P49902 561 aa19.23■□□□□ 0.67
TPM1-201ENST00000267996 CCT2P78371 535 aaKnown RBP19.23■□□□□ 0.67
TPM1-201ENST00000267996 RRP12Q5JTH9 1297 aaKnown RBP19.23■□□□□ 0.67
TPM1-201ENST00000267996 HHIPL2Q6UWX4 724 aa19.23■□□□□ 0.67
TPM1-201ENST00000267996 MXD3Q9BW11 206 aa19.23■□□□□ 0.67
TPM1-201ENST00000267996 MCM9Q9NXL9 1143 aa19.23■□□□□ 0.67
TPM1-201ENST00000267996 TTF2Q9UNY4 1162 aaKnown RBP19.23■□□□□ 0.67
TPM1-201ENST00000267996 ROBO3Q96MS0 1386 aa19.23■□□□□ 0.67
TPM1-201ENST00000267996 NAV1Q8NEY1 1877 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 GOLGA8BA8MQT2 603 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 SLC3A2P08195 630 aaKnown RBP19.22■□□□□ 0.67
TPM1-201ENST00000267996 USP17L8P0C7I0 530 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 HMGN5P82970 282 aaKnown RBP19.22■□□□□ 0.67
TPM1-201ENST00000267996 EVX2Q03828 476 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 TEX11Q8IYF3 940 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 TGFBRAP1Q8WUH2 860 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 VPS33BQ9H267 617 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 SENP2Q9HC62 589 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 NCOA5Q9HCD5 579 aaKnown RBP19.22■□□□□ 0.67
TPM1-201ENST00000267996 PIM2Q9P1W9 311 aa19.22■□□□□ 0.67
TPM1-201ENST00000267996 DDX60LQ5H9U9 1706 aaKnown RBP19.22■□□□□ 0.67
TPM1-201ENST00000267996 USP17L3A6NCW0 530 aa19.21■□□□□ 0.67
TPM1-201ENST00000267996 USP17L4A6NCW7 530 aa19.21■□□□□ 0.67
TPM1-201ENST00000267996 SART3Q15020 963 aaKnown RBP19.21■□□□□ 0.67
TPM1-201ENST00000267996 SOGA3Q5TF21 947 aa19.21■□□□□ 0.67
TPM1-201ENST00000267996 LARP1BQ659C4 914 aaKnown RBP19.21■□□□□ 0.67
TPM1-201ENST00000267996 APOA5Q6Q788 366 aa19.21■□□□□ 0.67
TPM1-201ENST00000267996 USP17L1Q7RTZ2 530 aa19.21■□□□□ 0.67
TPM1-201ENST00000267996 TOMM22Q9NS69 142 aa19.21■□□□□ 0.67
TPM1-201ENST00000267996 NID2Q14112 1375 aa19.21■□□□□ 0.67
TPM1-201ENST00000267996 PPIP5K2O43314 1243 aa19.2■□□□□ 0.66
TPM1-201ENST00000267996 DHX16O60231 1041 aaKnown RBP19.2■□□□□ 0.66
TPM1-201ENST00000267996 PTMSP20962 102 aa19.2■□□□□ 0.66
TPM1-201ENST00000267996 HDLBPQ00341 1268 aaKnown RBP19.2■□□□□ 0.66
TPM1-201ENST00000267996 SEC23AQ15436 765 aa19.2■□□□□ 0.66
TPM1-201ENST00000267996 STK11IPQ8N1F8 1099 aa19.2■□□□□ 0.66
TPM1-201ENST00000267996 TMTC2Q8N394 836 aa19.2■□□□□ 0.66
TPM1-201ENST00000267996 NAP1L2Q9ULW6 460 aaPredicted RBP19.2■□□□□ 0.66
TPM1-201ENST00000267996 FOCADQ5VW36 1801 aa19.2■□□□□ 0.66
TPM1-201ENST00000267996 BRCA1P38398 1863 aaKnown RBP19.2■□□□□ 0.66
TPM1-201ENST00000267996 PTPDC1A2A3K4 754 aa19.2■□□□□ 0.66
TPM1-201ENST00000267996 FOXD4L5Q5VV16 416 aaPredicted RBP19.2■□□□□ 0.66
TPM1-201ENST00000267996 FOXD4L4Q8WXT5 416 aaPredicted RBP19.2■□□□□ 0.66
TPM1-201ENST00000267996 FLT1P17948 1338 aa19.19■□□□□ 0.66
TPM1-201ENST00000267996 YDJCA8MPS7 323 aa19.19■□□□□ 0.66
TPM1-201ENST00000267996 F8W031 263 aaPredicted RBP19.19■□□□□ 0.66
TPM1-201ENST00000267996 F13A1P00488 732 aa19.19■□□□□ 0.66
TPM1-201ENST00000267996 PDE4BQ07343 736 aa19.19■□□□□ 0.66
TPM1-201ENST00000267996 MAPKAPK5Q8IW41 473 aa19.19■□□□□ 0.66
TPM1-201ENST00000267996 TEKT1Q969V4 418 aa19.19■□□□□ 0.66
TPM1-201ENST00000267996 CD2APQ9Y5K6 639 aa19.19■□□□□ 0.66
TPM1-201ENST00000267996 PSME4Q14997 1843 aa19.19■□□□□ 0.66
TPM1-201ENST00000267996 GOLGA6L22H0YM25 854 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms