RNA–Protein interactions for RNA: ENST00000505020.1

CDH9-202, Transcript of cadherin 9, humanhuman

TSL 2

Gene CDH9, Length 1,836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9-202ENST00000505020 ZMYND15Q9H091 742 aa11.14□□□□□ -0.63
CDH9-202ENST00000505020 RSPH6AQ9H0K4 717 aa11.13□□□□□ -0.63
CDH9-202ENST00000505020 UBE2Q2Q8WVN8 375 aa11.12□□□□□ -0.63
CDH9-202ENST00000505020 PUS7Q96PZ0 661 aaKnown RBP11.12□□□□□ -0.63
CDH9-202ENST00000505020 ATF5Q9Y2D1 282 aaPredicted RBP11.12□□□□□ -0.63
CDH9-202ENST00000505020 RNF216Q9NWF9 866 aaPredicted RBP11.09□□□□□ -0.63
CDH9-202ENST00000505020 DCAF8L1A6NGE4 600 aa11.09□□□□□ -0.63
CDH9-202ENST00000505020 CHGAP10645 457 aaKnown RBP11.08□□□□□ -0.64
CDH9-202ENST00000505020 BRD2P25440 801 aaKnown RBP11.07□□□□□ -0.64
CDH9-202ENST00000505020 NEUROD2Q15784 382 aa11.07□□□□□ -0.64
CDH9-202ENST00000505020 SPDYE4A6NLX3 237 aa11.06□□□□□ -0.64
CDH9-202ENST00000505020 C1orf115Q9H7X2 142 aa11.05□□□□□ -0.64
CDH9-202ENST00000505020 DHX37Q8IY37 1157 aaKnown RBP11.03□□□□□ -0.64
CDH9-202ENST00000505020 PROM2Q8N271 834 aa11□□□□□ -0.65
CDH9-202ENST00000505020 LMOD2Q6P5Q4 547 aa10.98□□□□□ -0.65
CDH9-202ENST00000505020 SPOCK2Q92563 424 aa10.96□□□□□ -0.65
CDH9-202ENST00000505020 KCTD17Q8N5Z5 321 aa10.95□□□□□ -0.66
CDH9-202ENST00000505020 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.94□□□□□ -0.66
CDH9-202ENST00000505020 RAD21O60216 631 aa10.93□□□□□ -0.66
CDH9-202ENST00000505020 BCL11AQ9H165 835 aa10.92□□□□□ -0.66
CDH9-202ENST00000505020 ARID3CA6NKF2 412 aa10.91□□□□□ -0.66
CDH9-202ENST00000505020 PDE4CQ08493 712 aa10.91□□□□□ -0.66
CDH9-202ENST00000505020 RGS22Q8NE09 1264 aa10.91□□□□□ -0.66
CDH9-202ENST00000505020 TAF7LQ5H9L4 462 aa10.88□□□□□ -0.67
CDH9-202ENST00000505020 FAM9AQ8IZU1 332 aaPredicted RBP10.88□□□□□ -0.67
CDH9-202ENST00000505020 HOXD11P31277 338 aaPredicted RBP10.86□□□□□ -0.67
CDH9-202ENST00000505020 POLR3GLQ9BT43 218 aa10.86□□□□□ -0.67
CDH9-202ENST00000505020 SLC24A3Q9HC58 644 aa10.85□□□□□ -0.67
CDH9-202ENST00000505020 MTMR7Q9Y216 660 aa10.84□□□□□ -0.67
CDH9-202ENST00000505020 APBB1O00213 710 aa10.83□□□□□ -0.68
CDH9-202ENST00000505020 ZNF428Q96B54 188 aa10.83□□□□□ -0.68
CDH9-202ENST00000505020 RBM25P49756 843 aaKnown RBP10.81□□□□□ -0.68
CDH9-202ENST00000505020 ZC3H15Q8WU90 426 aaKnown RBP10.78□□□□□ -0.68
CDH9-202ENST00000505020 FOXD4L5Q5VV16 416 aaPredicted RBP10.77□□□□□ -0.68
CDH9-202ENST00000505020 HS6ST3Q8IZP7 471 aa10.77□□□□□ -0.68
CDH9-202ENST00000505020 FOXD4L4Q8WXT5 416 aaPredicted RBP10.77□□□□□ -0.68
CDH9-202ENST00000505020 NKX1-1Q15270 411 aaPredicted RBP10.73□□□□□ -0.69
CDH9-202ENST00000505020 NEFLP07196 543 aa10.72□□□□□ -0.69
CDH9-202ENST00000505020 GTPBP6O43824 516 aaPredicted RBP10.72□□□□□ -0.69
CDH9-202ENST00000505020 P3H3Q8IVL6 736 aa10.72□□□□□ -0.69
CDH9-202ENST00000505020 TMCO4Q5TGY1 634 aa10.7□□□□□ -0.7
CDH9-202ENST00000505020 AEBP1Q8IUX7 1158 aa10.69□□□□□ -0.7
CDH9-202ENST00000505020 USP35Q9P2H5 1018 aa10.69□□□□□ -0.7
CDH9-202ENST00000505020 MFAP1P55081 439 aaKnown RBP10.68□□□□□ -0.7
CDH9-202ENST00000505020 TRAIPQ9BWF2 469 aa10.68□□□□□ -0.7
CDH9-202ENST00000505020 IL27Q8NEV9 243 aa10.66□□□□□ -0.7
CDH9-202ENST00000505020 FAM177A1Q8N128 213 aaPredicted RBP10.65□□□□□ -0.7
CDH9-202ENST00000505020 MKRN4PQ13434 485 aaPredicted RBP10.65□□□□□ -0.71
CDH9-202ENST00000505020 BCCIPQ9P287 314 aaKnown RBP eCLIP10.65□□□□□ -0.71
CDH9-202ENST00000505020 E9PSI1 815 aa10.64□□□□□ -0.71
CDH9-202ENST00000505020 CCDC82Q8N4S0 544 aa10.64□□□□□ -0.71
CDH9-202ENST00000505020 KCNV2Q8TDN2 545 aa10.64□□□□□ -0.71
CDH9-202ENST00000505020 ZNF692Q9BU19 519 aaPredicted RBP10.64□□□□□ -0.71
CDH9-202ENST00000505020 CIZ1Q9ULV3 898 aaPredicted RBP10.63□□□□□ -0.71
CDH9-202ENST00000505020 MKRN3Q13064 507 aaKnown RBP10.62□□□□□ -0.71
CDH9-202ENST00000505020 GPBP1L1Q9HC44 474 aaPredicted RBP10.61□□□□□ -0.71
CDH9-202ENST00000505020 ZNF219Q9P2Y4 722 aaPredicted RBP10.61□□□□□ -0.71
CDH9-202ENST00000505020 SP7Q8TDD2 431 aaPredicted RBP10.59□□□□□ -0.71
CDH9-202ENST00000505020 GZF1Q9H116 711 aaPredicted RBP10.58□□□□□ -0.72
CDH9-202ENST00000505020 RSPH4AQ5TD94 716 aa10.57□□□□□ -0.72
CDH9-202ENST00000505020 WDR70Q9NW82 654 aa10.57□□□□□ -0.72
CDH9-202ENST00000505020 BCL11BQ9C0K0 894 aaPredicted RBP10.55□□□□□ -0.72
CDH9-202ENST00000505020 CWC22Q9HCG8 908 aaKnown RBP10.54□□□□□ -0.72
CDH9-202ENST00000505020 PPM1GO15355 546 aaPredicted RBP10.51□□□□□ -0.73
CDH9-202ENST00000505020 ZNF592Q92610 1267 aa10.51□□□□□ -0.73
CDH9-202ENST00000505020 ZMYND10O75800 440 aa10.51□□□□□ -0.73
CDH9-202ENST00000505020 TICAM2Q86XR7 235 aa10.51□□□□□ -0.73
CDH9-202ENST00000505020 RNF25Q96BH1 459 aaPredicted RBP10.49□□□□□ -0.73
CDH9-202ENST00000505020 ZFP91Q96JP5 570 aaPredicted RBP10.49□□□□□ -0.73
CDH9-202ENST00000505020 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.49□□□□□ -0.73
CDH9-202ENST00000505020 CERS3Q8IU89 383 aa10.49□□□□□ -0.73
CDH9-202ENST00000505020 BRPF3Q9ULD4 1205 aa10.49□□□□□ -0.73
CDH9-202ENST00000505020 PLCD3Q8N3E9 789 aa10.48□□□□□ -0.73
CDH9-202ENST00000505020 PSMD1Q99460 953 aa10.47□□□□□ -0.73
CDH9-202ENST00000505020 CLSTN1O94985 981 aa10.44□□□□□ -0.74
CDH9-202ENST00000505020 PKNOX2Q96KN3 472 aa10.44□□□□□ -0.74
CDH9-202ENST00000505020 KDM4CQ9H3R0 1056 aa10.44□□□□□ -0.74
CDH9-202ENST00000505020 ARID4BQ4LE39 1312 aaPredicted RBP10.44□□□□□ -0.74
CDH9-202ENST00000505020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.43□□□□□ -0.74
CDH9-202ENST00000505020 HNRNPUL2Q1KMD3 747 aaKnown RBP10.43□□□□□ -0.74
CDH9-202ENST00000505020 PLSCR2Q9NRY7 297 aa10.43□□□□□ -0.74
CDH9-202ENST00000505020 TRAK2O60296 914 aa10.42□□□□□ -0.74
CDH9-202ENST00000505020 TRIM41Q8WV44 630 aa10.42□□□□□ -0.74
CDH9-202ENST00000505020 CC2D2BQ6DHV5 1058 aa10.42□□□□□ -0.74
CDH9-202ENST00000505020 FGD1P98174 961 aa10.41□□□□□ -0.74
CDH9-202ENST00000505020 CCDC125Q86Z20 511 aa10.41□□□□□ -0.74
CDH9-202ENST00000505020 CLUAP1Q96AJ1 413 aa10.41□□□□□ -0.74
CDH9-202ENST00000505020 IRX6P78412 446 aaPredicted RBP10.4□□□□□ -0.74
CDH9-202ENST00000505020 FBXW7Q969H0 707 aa10.4□□□□□ -0.74
CDH9-202ENST00000505020 POLA2Q14181 598 aa10.4□□□□□ -0.75
CDH9-202ENST00000505020 SEMA3EO15041 775 aa10.39□□□□□ -0.75
CDH9-202ENST00000505020 FLIIQ13045 1269 aa10.39□□□□□ -0.75
CDH9-202ENST00000505020 BARGINQ6ZT62 677 aa10.38□□□□□ -0.75
CDH9-202ENST00000505020 ZNF326Q5BKZ1 582 aaKnown RBP10.37□□□□□ -0.75
CDH9-202ENST00000505020 TMED8Q6PL24 325 aaPredicted RBP10.37□□□□□ -0.75
CDH9-202ENST00000505020 CADPS2Q86UW7 1296 aa10.37□□□□□ -0.75
CDH9-202ENST00000505020 AK7Q96M32 723 aa10.37□□□□□ -0.75
CDH9-202ENST00000505020 ZNF316A6NFI3 1004 aaPredicted RBP10.36□□□□□ -0.75
CDH9-202ENST00000505020 IRF5Q13568 498 aa10.36□□□□□ -0.75
CDH9-202ENST00000505020 TESPA1A2RU30 521 aaPredicted RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms