RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 C16orf95Q9H693 158 aa5.07□□□□□ -1.6
SCN1A-213ENST00000636759 CACNA1HO95180 2353 aa5.07□□□□□ -1.6
SCN1A-213ENST00000636759 TRAV21A0A0B4J279 112 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV3-35A0A0C4DH35 117 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 AVPP01185 164 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV1-46P01743 117 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 Q9HAA7 133 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV1-58A0A0C4DH39 117 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 GPHB5Q86YW7 130 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 OVOL2Q9BRP0 275 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 BUB1B-PAK6H3BSN5 160 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 H7BZZ5 65 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 TRBV12-3P01733 135 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 POLR2KP53803 58 aaKnown RBP5.06□□□□□ -1.6
SCN1A-213ENST00000636759 PRRC2AP48634 2157 aaKnown RBP5.06□□□□□ -1.6
SCN1A-213ENST00000636759 ARHGAP32A7KAX9 2087 aa5.06□□□□□ -1.6
SCN1A-213ENST00000636759 TRBV7-6A0A0J9YX20 115 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 RNF223E7ERA6 249 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV3-23P01764 117 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 HILS1P60008 231 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 ATP5EP2Q5VTU8 51 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 MPLKIPQ8TAP9 179 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 SMAD5-AS1Q9Y6J3 95 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 TPRP12270 2363 aaKnown RBP5.05□□□□□ -1.6
SCN1A-213ENST00000636759 TRBV27A0A0K0K1C4 114 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 NDUFB3O43676 98 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 CD28P10747 220 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 HOXD3P31249 432 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-213ENST00000636759 LY6G5BQ8NDX9 201 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 LINC00474Q9P2X8 69 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV4OR15-8A0A075B7B6 117 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 A0A087WW49 117 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 CCKP06307 115 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 SS18Q15532 418 aa5.05□□□□□ -1.6
SCN1A-213ENST00000636759 TTC28Q96AY4 2481 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 ATP5EP56381 51 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-213ENST00000636759 ZFAND3Q9H8U3 227 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV3-66A0A0C4DH42 116 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 F8WEM9 126 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 RPL28P46779 137 aaKnown RBP5.04□□□□□ -1.6
SCN1A-213ENST00000636759 SNRPD3P62318 126 aaKnown RBP5.04□□□□□ -1.6
SCN1A-213ENST00000636759 FAM74A4Q5TZK3 123 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 RNASE6Q93091 150 aaKnown RBP5.04□□□□□ -1.6
SCN1A-213ENST00000636759 TRAV7A0A075B6U4 112 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV3OR16-13A0A075B7E8 117 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV3-74A0A0B4J1X5 117 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 RPL11P62913 178 aaKnown RBP5.04□□□□□ -1.6
SCN1A-213ENST00000636759 SUMO4Q6EEV6 95 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 CEP250Q9BV73 2442 aa5.04□□□□□ -1.6
SCN1A-213ENST00000636759 A0A087WWL8 130 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 ZNF625Q96I27 306 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-213ENST00000636759 LAMTOR3Q9UHA4 124 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 MOB4Q9Y3A3 225 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 SNURFQ9Y675 71 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 U3KQE9 123 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 BSPH1Q075Z2 132 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 ENHOQ6UWT2 76 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 IGLV4-3A0A075B6K6 122 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV1-3A0A0C4DH29 117 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 MED14OSP0DP75 135 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 C9orf47Q6ZRZ4 202 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 WFDC9Q8NEX5 89 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 LINC00308Q8TCZ7 52 aa5.03□□□□□ -1.6
SCN1A-213ENST00000636759 ASH1LQ9NR48 2969 aaKnown RBP5.02□□□□□ -1.61
SCN1A-213ENST00000636759 NDUFC1O43677 76 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 CD164Q04900 197 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 FBXL19-AS1Q494R0 122 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 FAM19A1Q7Z5A9 133 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 APRG1Q8IVJ8 170 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 C20orf203Q8NBC4 194 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 MRPL53Q96EL3 112 aaKnown RBP5.02□□□□□ -1.61
SCN1A-213ENST00000636759 LENEPQ9Y5L5 61 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 CUBNO60494 3623 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 MALRD1Q5VYJ5 2156 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 BEAN1Q3B7T3 259 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 MRPL55Q7Z7F7 128 aaKnown RBP5.02□□□□□ -1.61
SCN1A-213ENST00000636759 Q8N2B8 174 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 UBL5Q9BZL1 73 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 TMEM89A2RUT3 159 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 A8MZ25 164 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 CRPP02741 224 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 BLCAPP62952 87 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 LYPD5Q6UWN5 251 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 SOSTDC1Q6X4U4 206 aa5.02□□□□□ -1.61
SCN1A-213ENST00000636759 ZNF469Q96JG9 3925 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-213ENST00000636759 IGHV3-49A0A0A0MS15 119 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 GNRH2O43555 120 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 RNASE4P34096 147 aaKnown RBP5.01□□□□□ -1.61
SCN1A-213ENST00000636759 VMO1Q7Z5L0 202 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 FAM218AQ96MZ4 157 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 CSMD2Q7Z408 3487 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 POLEQ07864 2286 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-213ENST00000636759 IGHV1-8P0DP01 117 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 COX7A1P24310 79 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 KLKP1Q107X0 134 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 HIST2H2BCQ6DN03 193 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 HIST2H2BDQ6DRA6 164 aa5.01□□□□□ -1.61
SCN1A-213ENST00000636759 RMI2Q96E14 147 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms