RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 CIRBP-AS1Q8TBR5 109 aa6.69□□□□□ -1.34
SHKBP1-210ENST00000595874 SMIM12Q96EX1 92 aa6.69□□□□□ -1.34
SHKBP1-210ENST00000595874 COTL1Q14019 142 aa6.68□□□□□ -1.34
SHKBP1-210ENST00000595874 MIAQ16674 131 aa6.68□□□□□ -1.34
SHKBP1-210ENST00000595874 KRTAP26-1Q6PEX3 210 aa6.68□□□□□ -1.34
SHKBP1-210ENST00000595874 SMIM7Q9BQ49 75 aa6.68□□□□□ -1.34
SHKBP1-210ENST00000595874 MYCBP2O75592 4640 aa6.68□□□□□ -1.34
SHKBP1-210ENST00000595874 PKHD1L1Q86WI1 4243 aa6.68□□□□□ -1.34
SHKBP1-210ENST00000595874 hDV102S1A0JD36 115 aa6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 GAGE12HA6NDE8 117 aa6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 SMKR1H3BMG3 65 aa6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 PANO1I0J062 215 aa6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 J3QL48 77 aa6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 PLA2G1BP04054 148 aaKnown RBP6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 PKIAP61925 76 aa6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 C14orf177Q52M58 125 aa6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 RNASEKQ6P5S7 137 aaKnown RBP6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 SMIM15Q7Z3B0 74 aa6.67□□□□□ -1.34
SHKBP1-210ENST00000595874 ZNF727A8MUV8 499 aa6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 NCR2O95944 276 aa6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 SRP19P09132 144 aaKnown RBP6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 TAGLN2P37802 199 aaKnown RBP6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 HIGD2BQ4VC39 106 aa6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 AMMECR1LQ6DCA0 310 aa6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 CHAC1Q9BUX1 264 aa6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 PRR34Q9NV39 138 aa6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.66□□□□□ -1.34
SHKBP1-210ENST00000595874 HERC1Q15751 4861 aa6.65□□□□□ -1.34
SHKBP1-210ENST00000595874 TMEM250H0YL14 139 aa6.65□□□□□ -1.34
SHKBP1-210ENST00000595874 CHTF8P0CG12 524 aa6.65□□□□□ -1.34
SHKBP1-210ENST00000595874 PMCHP20382 165 aa6.65□□□□□ -1.34
SHKBP1-210ENST00000595874 WDR73Q6P4I2 378 aa6.65□□□□□ -1.34
SHKBP1-210ENST00000595874 BORCS7Q96B45 105 aa6.65□□□□□ -1.34
SHKBP1-210ENST00000595874 TMEM242Q9NWH2 141 aa6.65□□□□□ -1.34
SHKBP1-210ENST00000595874 SDHAF1A6NFY7 115 aa6.64□□□□□ -1.35
SHKBP1-210ENST00000595874 A8MWL6 223 aa6.64□□□□□ -1.35
SHKBP1-210ENST00000595874 APCSP02743 223 aa6.64□□□□□ -1.35
SHKBP1-210ENST00000595874 SRSF3P84103 164 aaKnown RBP6.64□□□□□ -1.35
SHKBP1-210ENST00000595874 AMN1Q8IY45 258 aa6.64□□□□□ -1.35
SHKBP1-210ENST00000595874 DPH3Q96FX2 82 aa6.64□□□□□ -1.35
SHKBP1-210ENST00000595874 FAM210AQ96ND0 272 aa6.64□□□□□ -1.35
SHKBP1-210ENST00000595874 HIGD1CA8MV81 97 aa6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 C9JQL5 133 aa6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 RPS10P46783 165 aaKnown RBP6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 ADIRFQ15847 76 aa6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 FAM231DQ6ZW35 169 aa6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 LINC01551Q86U37 167 aa6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 LYPD6BQ8NI32 183 aa6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 LINC00526Q96FQ7 95 aa6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 CNFNQ9BYD5 112 aa6.63□□□□□ -1.35
SHKBP1-210ENST00000595874 SLPIP03973 132 aa6.62□□□□□ -1.35
SHKBP1-210ENST00000595874 FGF6P10767 208 aa6.62□□□□□ -1.35
SHKBP1-210ENST00000595874 HNRNPA3P51991 378 aaKnown RBP6.62□□□□□ -1.35
SHKBP1-210ENST00000595874 RPL37AP61513 92 aaKnown RBP6.62□□□□□ -1.35
SHKBP1-210ENST00000595874 RNASE13Q5GAN3 156 aaKnown RBP6.62□□□□□ -1.35
SHKBP1-210ENST00000595874 C9orf163Q8N9P6 203 aa6.62□□□□□ -1.35
SHKBP1-210ENST00000595874 RNF185Q96GF1 192 aa6.62□□□□□ -1.35
SHKBP1-210ENST00000595874 FLG2Q5D862 2391 aaPredicted RBP6.62□□□□□ -1.35
SHKBP1-210ENST00000595874 A0A1B0GUV1 79 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 FAM231BA6NCW3 169 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 TSHBP01222 138 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 XCL1P47992 114 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 KRTAP10-4P60372 401 aaPredicted RBP6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 RPL23P62829 140 aaKnown RBP6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 C15orf56Q8N910 161 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 TSKUQ8WUA8 353 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 CHCHD10Q8WYQ3 142 aaPredicted RBP6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 ST20Q9HBF5 79 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 AP5S1Q9NUS5 200 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 V9GYV3 84 aa6.61□□□□□ -1.35
SHKBP1-210ENST00000595874 TRAV8-4A0A0B4J246 113 aa6.6□□□□□ -1.35
SHKBP1-210ENST00000595874 IGKV2-24A0A0C4DH68 120 aa6.6□□□□□ -1.35
SHKBP1-210ENST00000595874 A0A1B0GUT8 65 aa6.6□□□□□ -1.35
SHKBP1-210ENST00000595874 I3L3M4 83 aa6.6□□□□□ -1.35
SHKBP1-210ENST00000595874 RAB4AP20338 218 aa6.6□□□□□ -1.35
SHKBP1-210ENST00000595874 SDIM1Q6ZPB5 146 aa6.6□□□□□ -1.35
SHKBP1-210ENST00000595874 NUP35Q8NFH5 326 aa6.6□□□□□ -1.35
SHKBP1-210ENST00000595874 ISOC2Q96AB3 205 aa6.6□□□□□ -1.35
SHKBP1-210ENST00000595874 SRRM2Q9UQ35 2752 aaKnown RBP6.59□□□□□ -1.35
SHKBP1-210ENST00000595874 IGHV3-64A0A075B6Q5 118 aa6.59□□□□□ -1.35
SHKBP1-210ENST00000595874 CCL25O15444 150 aa6.59□□□□□ -1.35
SHKBP1-210ENST00000595874 CAMPP49913 170 aa6.59□□□□□ -1.35
SHKBP1-210ENST00000595874 TMEM241Q24JQ0 296 aa6.59□□□□□ -1.35
SHKBP1-210ENST00000595874 DGAT2L7PQ6IED9 249 aa6.59□□□□□ -1.35
SHKBP1-210ENST00000595874 TMEM101Q96IK0 257 aa6.59□□□□□ -1.35
SHKBP1-210ENST00000595874 OSTCQ9NRP0 149 aa6.59□□□□□ -1.35
SHKBP1-210ENST00000595874 FAT3Q8TDW7 4589 aa6.59□□□□□ -1.36
SHKBP1-210ENST00000595874 COX6A2Q02221 97 aa6.58□□□□□ -1.36
SHKBP1-210ENST00000595874 RIGQ13278 110 aa6.58□□□□□ -1.36
SHKBP1-210ENST00000595874 CT83Q5H943 113 aa6.58□□□□□ -1.36
SHKBP1-210ENST00000595874 MRPL54Q6P161 138 aaKnown RBP6.58□□□□□ -1.36
SHKBP1-210ENST00000595874 CLRN3Q8NCR9 226 aa6.58□□□□□ -1.36
SHKBP1-210ENST00000595874 OR5A1Q8NGJ0 315 aa6.58□□□□□ -1.36
SHKBP1-210ENST00000595874 BTF3L4Q96K17 158 aa6.58□□□□□ -1.36
SHKBP1-210ENST00000595874 TMEM191AQ9H0A3 160 aa6.58□□□□□ -1.36
SHKBP1-210ENST00000595874 FCER1GP30273 86 aa6.57□□□□□ -1.36
SHKBP1-210ENST00000595874 FOXI1Q12951 378 aa6.57□□□□□ -1.36
SHKBP1-210ENST00000595874 MAJINQ3KP22 176 aa6.57□□□□□ -1.36
SHKBP1-210ENST00000595874 PRSS3P2Q8NHM4 247 aa6.57□□□□□ -1.36
SHKBP1-210ENST00000595874 MRAP2Q96G30 205 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms