RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 NIT1Q86X76 327 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 ORMDL3Q8N138 153 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 PRELID3AQ96N28 172 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 C20orf78Q9BR46 151 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 ALKBH7Q9BT30 221 aaPredicted RBP6.29□□□□□ -1.4
VPS35-211ENST00000569950 CHCHD7Q9BUK0 85 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 MRPL18Q9H0U6 180 aaKnown RBP6.29□□□□□ -1.4
VPS35-211ENST00000569950 Q9H8V8 135 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 ST20Q9HBF5 79 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 PKD1P98161 4303 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 MT-ND6P03923 174 aa6.28□□□□□ -1.4
VPS35-211ENST00000569950 C4orf48Q5BLP8 95 aa6.28□□□□□ -1.4
VPS35-211ENST00000569950 FAM104AQ969W3 186 aa6.28□□□□□ -1.4
VPS35-211ENST00000569950 SMIM2Q9BVW6 85 aa6.28□□□□□ -1.4
VPS35-211ENST00000569950 NBDYA0A0U1RRE5 68 aa6.27□□□□□ -1.41
VPS35-211ENST00000569950 SIVA1O15304 175 aa6.27□□□□□ -1.41
VPS35-211ENST00000569950 APCSP02743 223 aa6.27□□□□□ -1.41
VPS35-211ENST00000569950 COX19Q49B96 90 aa6.27□□□□□ -1.41
VPS35-211ENST00000569950 LINC01556Q5JQF7 62 aa6.27□□□□□ -1.41
VPS35-211ENST00000569950 UBE2DNLQ8IWF7 75 aa6.27□□□□□ -1.41
VPS35-211ENST00000569950 URB1-AS1Q96HZ7 61 aa6.27□□□□□ -1.41
VPS35-211ENST00000569950 HECTD4Q9Y4D8 3996 aa6.27□□□□□ -1.41
VPS35-211ENST00000569950 I3L3M4 83 aa6.26□□□□□ -1.41
VPS35-211ENST00000569950 S100A1P23297 94 aa6.26□□□□□ -1.41
VPS35-211ENST00000569950 FABP9Q0Z7S8 132 aa6.26□□□□□ -1.41
VPS35-211ENST00000569950 MPV17L2Q567V2 206 aa6.26□□□□□ -1.41
VPS35-211ENST00000569950 Q6ZRN7 208 aaPredicted RBP6.26□□□□□ -1.41
VPS35-211ENST00000569950 LAMTOR2Q9Y2Q5 125 aa6.26□□□□□ -1.41
VPS35-211ENST00000569950 IGHV1-24A0A0C4DH33 117 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 LINC01546A6NGU7 62 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 VCYO14598 125 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 PPP1R17O96001 155 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 RAB5AP20339 215 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 COTL1Q14019 142 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 C18orf32Q8TCD1 76 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 TRAPPC1Q9Y5R8 145 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 PKHD1P08F94 4074 aa6.25□□□□□ -1.41
VPS35-211ENST00000569950 IGLV4-60A0A075B6I1 120 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.24□□□□□ -1.41
VPS35-211ENST00000569950 IGKV2-29A2NJV5 120 aaPredicted RBP6.24□□□□□ -1.41
VPS35-211ENST00000569950 M0R2N4 97 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 RTL8CO15255 209 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 TCAPO15273 167 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 TRGC2P03986 189 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 PMCHP20382 165 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 LINC00310P59036 64 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 RBX1P62877 108 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 GAGE6Q13070 117 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 TMEM97Q5BJF2 176 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 Q8N8P6 123 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 Q8N976 141 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 C20orf203Q8NBC4 194 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 TMEM243Q9BU79 118 aa6.24□□□□□ -1.41
VPS35-211ENST00000569950 TRBV25-1A0A075B6N4 114 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 TRAV8-6A0A0B4J262 113 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 LOC389332A0A1B0GUA5 103 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 IBA57-AS1B1ANH7 110 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 IGHV3-30P01768 117 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 IGHV3-33P01772 117 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 IGHV3-30-3P0DP02 117 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 IGHV3-30-5P0DP03 117 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 IFI27P40305 119 aaPredicted RBP6.23□□□□□ -1.41
VPS35-211ENST00000569950 AMTP48728 403 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 CHCHD5Q9BSY4 110 aa6.23□□□□□ -1.41
VPS35-211ENST00000569950 A0A096LNJ9 63 aa6.22□□□□□ -1.41
VPS35-211ENST00000569950 A0A1B0GUV1 79 aa6.22□□□□□ -1.41
VPS35-211ENST00000569950 LORP23490 312 aaPredicted RBP6.22□□□□□ -1.41
VPS35-211ENST00000569950 RPL39P62891 51 aaKnown RBP6.22□□□□□ -1.41
VPS35-211ENST00000569950 KRTAP26-1Q6PEX3 210 aa6.22□□□□□ -1.41
VPS35-211ENST00000569950 ENHOQ6UWT2 76 aa6.22□□□□□ -1.41
VPS35-211ENST00000569950 MRPL52Q86TS9 123 aaKnown RBP6.22□□□□□ -1.41
VPS35-211ENST00000569950 MAP1LC3AQ9H492 121 aa6.22□□□□□ -1.41
VPS35-211ENST00000569950 PRR34Q9NV39 138 aa6.22□□□□□ -1.41
VPS35-211ENST00000569950 FGF6P10767 208 aa6.21□□□□□ -1.42
VPS35-211ENST00000569950 UBE2D4Q9Y2X8 147 aa6.21□□□□□ -1.42
VPS35-211ENST00000569950 DNAH5Q8TE73 4624 aa6.21□□□□□ -1.42
VPS35-211ENST00000569950 EPPK1P58107 5090 aaKnown RBP6.2□□□□□ -1.42
VPS35-211ENST00000569950 H7C423 109 aa6.2□□□□□ -1.42
VPS35-211ENST00000569950 K7EP13 123 aa6.2□□□□□ -1.42
VPS35-211ENST00000569950 TTC32Q5I0X7 151 aa6.2□□□□□ -1.42
VPS35-211ENST00000569950 LINC00528Q8N1L1 170 aa6.2□□□□□ -1.42
VPS35-211ENST00000569950 MAPKAPK5-AS1Q8N8E1 139 aa6.2□□□□□ -1.42
VPS35-211ENST00000569950 KIR2DL4Q99706 377 aa6.2□□□□□ -1.42
VPS35-211ENST00000569950 NXT2Q9NPJ8 142 aaKnown RBP6.2□□□□□ -1.42
VPS35-211ENST00000569950 KLK12Q9UKR0 248 aa6.2□□□□□ -1.42
VPS35-211ENST00000569950 FCER1GP30273 86 aa6.19□□□□□ -1.42
VPS35-211ENST00000569950 LAGE3Q14657 143 aa6.19□□□□□ -1.42
VPS35-211ENST00000569950 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.19□□□□□ -1.42
VPS35-211ENST00000569950 OPRPNQ99935 248 aaPredicted RBP6.19□□□□□ -1.42
VPS35-211ENST00000569950 TIMM21Q9BVV7 248 aa6.19□□□□□ -1.42
VPS35-211ENST00000569950 CDC42SE2Q9NRR3 84 aa6.19□□□□□ -1.42
VPS35-211ENST00000569950 CSDC2Q9Y534 153 aaKnown RBP6.19□□□□□ -1.42
VPS35-211ENST00000569950 DYNC1H1Q14204 4646 aaKnown RBP6.18□□□□□ -1.42
VPS35-211ENST00000569950 A0A087WX48 190 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 IGIPA6NJ69 53 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 TMEM262E9PQX1 116 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 K7EMI3 77 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 NUPR1O60356 82 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BKO60814 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BJP06899 126 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms