RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 ERASQ7Z444 233 aa13.46□□□□□ -0.25
CLN3-263ENST00000637871 TRBV27A0A0K0K1C4 114 aa13.46□□□□□ -0.26
CLN3-263ENST00000637871 A8MWV9 139 aa13.46□□□□□ -0.26
CLN3-263ENST00000637871 BATFQ16520 125 aa13.46□□□□□ -0.26
CLN3-263ENST00000637871 DKK2Q9UBU2 259 aa13.46□□□□□ -0.26
CLN3-263ENST00000637871 M0R2P5 195 aa13.45□□□□□ -0.26
CLN3-263ENST00000637871 C2orf66Q6UXQ4 117 aa13.45□□□□□ -0.26
CLN3-263ENST00000637871 BOD1L2Q8IYS8 172 aa13.45□□□□□ -0.26
CLN3-263ENST00000637871 CYSLTR1Q9Y271 337 aa13.45□□□□□ -0.26
CLN3-263ENST00000637871 OR11H12B2RN74 326 aa13.44□□□□□ -0.26
CLN3-263ENST00000637871 ANKRD39Q53RE8 183 aa13.44□□□□□ -0.26
CLN3-263ENST00000637871 STHQ8IWL8 128 aa13.44□□□□□ -0.26
CLN3-263ENST00000637871 MUC4Q99102 2169 aa13.44□□□□□ -0.26
CLN3-263ENST00000637871 A0A087WWL8 130 aa13.43□□□□□ -0.26
CLN3-263ENST00000637871 RBMY1BA6NDE4 496 aaKnown RBP13.43□□□□□ -0.26
CLN3-263ENST00000637871 RBMY1EA6NEQ0 496 aaKnown RBP13.43□□□□□ -0.26
CLN3-263ENST00000637871 M0QY20 66 aa13.43□□□□□ -0.26
CLN3-263ENST00000637871 RBMY1DP0C7P1 496 aaKnown RBP13.43□□□□□ -0.26
CLN3-263ENST00000637871 RHOHQ15669 191 aa13.43□□□□□ -0.26
CLN3-263ENST00000637871 ZNF56Q15929 161 aa13.43□□□□□ -0.26
CLN3-263ENST00000637871 TMEM141Q96I45 108 aa13.43□□□□□ -0.26
CLN3-263ENST00000637871 JPT2Q9H910 190 aa13.43□□□□□ -0.26
CLN3-263ENST00000637871 F8VRH5 84 aa13.42□□□□□ -0.26
CLN3-263ENST00000637871 PAPPA-AS1Q5QFB9 102 aa13.42□□□□□ -0.26
CLN3-263ENST00000637871 LINC00482Q8N8I6 264 aa13.42□□□□□ -0.26
CLN3-263ENST00000637871 HHLA3Q9XRX5 114 aa13.42□□□□□ -0.26
CLN3-263ENST00000637871 SDHAF1A6NFY7 115 aa13.42□□□□□ -0.26
CLN3-263ENST00000637871 RHODO00212 210 aa13.42□□□□□ -0.26
CLN3-263ENST00000637871 HINT1P49773 126 aaPredicted RBP13.42□□□□□ -0.26
CLN3-263ENST00000637871 ODF3L2Q3SX64 289 aa13.42□□□□□ -0.26
CLN3-263ENST00000637871 LINC01587Q99440 93 aa13.42□□□□□ -0.26
CLN3-263ENST00000637871 RBMY1A1P0DJD3 496 aaKnown RBP13.41□□□□□ -0.26
CLN3-263ENST00000637871 RBMY1CP0DJD4 496 aa13.41□□□□□ -0.26
CLN3-263ENST00000637871 FGF6P10767 208 aa13.41□□□□□ -0.26
CLN3-263ENST00000637871 RBMY1FQ15415 496 aaKnown RBP13.41□□□□□ -0.26
CLN3-263ENST00000637871 FAM74A4Q5TZK3 123 aa13.41□□□□□ -0.26
CLN3-263ENST00000637871 ZFP2Q6ZN57 461 aa13.41□□□□□ -0.26
CLN3-263ENST00000637871 STPG4Q8N801 248 aa13.41□□□□□ -0.26
CLN3-263ENST00000637871 NEXN-AS1Q8NBZ9 246 aa13.41□□□□□ -0.26
CLN3-263ENST00000637871 TIMM17AQ99595 171 aa13.4□□□□□ -0.26
CLN3-263ENST00000637871 MRPL35Q9NZE8 188 aaKnown RBP13.39□□□□□ -0.27
CLN3-263ENST00000637871 CHTOPQ9Y3Y2 248 aaKnown RBP13.39□□□□□ -0.27
CLN3-263ENST00000637871 GAGE1Q13065 139 aa13.39□□□□□ -0.27
CLN3-263ENST00000637871 BEAN1Q3B7T3 259 aa13.39□□□□□ -0.27
CLN3-263ENST00000637871 LINC00469Q8N7U9 141 aa13.39□□□□□ -0.27
CLN3-263ENST00000637871 I3L3M4 83 aa13.38□□□□□ -0.27
CLN3-263ENST00000637871 IGLV1-51P01701 117 aa13.38□□□□□ -0.27
CLN3-263ENST00000637871 SEC11AP67812 179 aa13.38□□□□□ -0.27
CLN3-263ENST00000637871 MPV17L2Q567V2 206 aa13.38□□□□□ -0.27
CLN3-263ENST00000637871 TMEM97Q5BJF2 176 aa13.38□□□□□ -0.27
CLN3-263ENST00000637871 BVES-AS1Q5T3Y7 98 aa13.38□□□□□ -0.27
CLN3-263ENST00000637871 HIGD1BQ9P298 99 aa13.38□□□□□ -0.27
CLN3-263ENST00000637871 ZC2HC1BQ5TFG8 222 aa13.37□□□□□ -0.27
CLN3-263ENST00000637871 C2orf91Q6ZV80 131 aa13.37□□□□□ -0.27
CLN3-263ENST00000637871 SAP30O75446 220 aa13.36□□□□□ -0.27
CLN3-263ENST00000637871 HSD52Q0P140 79 aa13.36□□□□□ -0.27
CLN3-263ENST00000637871 BAALCQ8WXS3 180 aa13.36□□□□□ -0.27
CLN3-263ENST00000637871 DNAJC30Q96LL9 226 aa13.36□□□□□ -0.27
CLN3-263ENST00000637871 IGIPA6NJ69 53 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 NMUP48645 174 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 ZNF124Q15973 351 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 C11orf72Q8NBR9 251 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 ORAOV1Q8WV07 137 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 MGAM2Q2M2H8 2515 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 NOTCH3Q9UM47 2321 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 AGRNO00468 2067 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 NPSP0C0P6 89 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 UFSP1Q6NVU6 142 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 MORN3Q6PF18 240 aaPredicted RBP13.35□□□□□ -0.27
CLN3-263ENST00000637871 TMEM208Q9BTX3 173 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 C1QTNF4Q9BXJ3 329 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 TP53TG1Q9Y2A0 90 aa13.35□□□□□ -0.27
CLN3-263ENST00000637871 HTN1P15515 57 aa13.34□□□□□ -0.27
CLN3-263ENST00000637871 PMVKQ15126 192 aa13.34□□□□□ -0.27
CLN3-263ENST00000637871 PRSS29PA6NIE9 313 aa13.33□□□□□ -0.28
CLN3-263ENST00000637871 RS1O15537 224 aa13.33□□□□□ -0.28
CLN3-263ENST00000637871 ZNF25P17030 456 aaPredicted RBP13.33□□□□□ -0.28
CLN3-263ENST00000637871 CRYBA4P53673 196 aa13.32□□□□□ -0.28
CLN3-263ENST00000637871 WFDC9Q8NEX5 89 aa13.32□□□□□ -0.28
CLN3-263ENST00000637871 TNFRSF18Q9Y5U5 241 aa13.32□□□□□ -0.28
CLN3-263ENST00000637871 CIDEAO60543 219 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 OXLD1Q5BKU9 147 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 XCL2Q9UBD3 114 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 A6NDN8 102 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 IGHV3-53P01767 116 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 CFAP126Q5VTH2 177 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 GTSCR1Q86UQ5 136 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 C1orf158Q8N1D5 194 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 C20orf203Q8NBC4 194 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 COX11Q9Y6N1 276 aa13.31□□□□□ -0.28
CLN3-263ENST00000637871 SORL1Q92673 2214 aa13.3□□□□□ -0.28
CLN3-263ENST00000637871 TSHBP01222 138 aa13.3□□□□□ -0.28
CLN3-263ENST00000637871 NEGR1Q7Z3B1 354 aa13.3□□□□□ -0.28
CLN3-263ENST00000637871 PCP2Q8IVA1 136 aa13.3□□□□□ -0.28
CLN3-263ENST00000637871 PYGO1Q9Y3Y4 419 aa13.3□□□□□ -0.28
CLN3-263ENST00000637871 G3V4G9 280 aa13.29□□□□□ -0.28
CLN3-263ENST00000637871 INSL3P51460 131 aa13.29□□□□□ -0.28
CLN3-263ENST00000637871 HERVK_113P61574 105 aa13.29□□□□□ -0.28
CLN3-263ENST00000637871 TAL2Q16559 108 aa13.29□□□□□ -0.28
CLN3-263ENST00000637871 IL17DQ8TAD2 202 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms