RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-256	ENST00000637107	ODF1	Q14990	250 aa		12.6	□□□□□ -0.39
CLN3-256	ENST00000637107	AGRN	O00468	2067 aa		12.59	□□□□□ -0.39
CLN3-256	ENST00000637107	NUDT3	O95989	172 aa		12.59	□□□□□ -0.39
CLN3-256	ENST00000637107	ORMDL2	Q53FV1	153 aa		12.59	□□□□□ -0.39
CLN3-256	ENST00000637107	ZMAT4	Q9H898	229 aa		12.59	□□□□□ -0.39
CLN3-256	ENST00000637107	SYT8	Q8NBV8	401 aa		12.58	□□□□□ -0.39
CLN3-256	ENST00000637107		A0A087WWL8	130 aa		12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	RBMY1B	A6NDE4	496 aa	Known RBP	12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	RBMY1E	A6NEQ0	496 aa	Known RBP	12.58	□□□□□ -0.4
CLN3-256	ENST00000637107		K7EMI3	77 aa		12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	RBMY1D	P0C7P1	496 aa	Known RBP	12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	RBMY1A1	P0DJD3	496 aa	Known RBP	12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	RBMY1C	P0DJD4	496 aa		12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	RBMY1F	Q15415	496 aa	Known RBP	12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	LINC00469	Q8N7U9	141 aa		12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	FAM110A	Q9BQ89	295 aa		12.58	□□□□□ -0.4
CLN3-256	ENST00000637107	TRGV11	A0A075B6L2	103 aa		12.57	□□□□□ -0.4
CLN3-256	ENST00000637107	SUMO4	Q6EEV6	95 aa		12.57	□□□□□ -0.4
CLN3-256	ENST00000637107	RPL32	P62910	135 aa	Known RBP	12.56	□□□□□ -0.4
CLN3-256	ENST00000637107	TOMM6	Q96B49	74 aa		12.56	□□□□□ -0.4
CLN3-256	ENST00000637107	CSTL1	Q9H114	145 aa		12.56	□□□□□ -0.4
CLN3-256	ENST00000637107	DNAH9	Q9NYC9	4486 aa		12.56	□□□□□ -0.4
CLN3-256	ENST00000637107		F5H697	171 aa		12.55	□□□□□ -0.4
CLN3-256	ENST00000637107	FGF6	P10767	208 aa		12.55	□□□□□ -0.4
CLN3-256	ENST00000637107	CMC4	P56277	68 aa	Predicted RBP	12.55	□□□□□ -0.4
CLN3-256	ENST00000637107	CBY3	A6NI87	242 aa		12.54	□□□□□ -0.4
CLN3-256	ENST00000637107		A8MZ25	164 aa		12.54	□□□□□ -0.4
CLN3-256	ENST00000637107	CRYGD	P07320	174 aa		12.54	□□□□□ -0.4
CLN3-256	ENST00000637107	IGKC	P01834	107 aa		12.54	□□□□□ -0.4
CLN3-256	ENST00000637107	MPV17L2	Q567V2	206 aa		12.54	□□□□□ -0.4
CLN3-256	ENST00000637107	C2orf91	Q6ZV80	131 aa		12.54	□□□□□ -0.4
CLN3-256	ENST00000637107	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	12.53	□□□□□ -0.4
CLN3-256	ENST00000637107	DPM2	O94777	84 aa		12.53	□□□□□ -0.4
CLN3-256	ENST00000637107	POLR2K	P53803	58 aa	Known RBP	12.53	□□□□□ -0.4
CLN3-256	ENST00000637107	TCTA	P57738	103 aa		12.53	□□□□□ -0.4
CLN3-256	ENST00000637107	FAM74A4	Q5TZK3	123 aa		12.53	□□□□□ -0.4
CLN3-256	ENST00000637107	NEGR1	Q7Z3B1	354 aa		12.53	□□□□□ -0.4
CLN3-256	ENST00000637107	SCGB3A1	Q96QR1	104 aa		12.53	□□□□□ -0.4
CLN3-256	ENST00000637107	HHLA3	Q9XRX5	114 aa		12.53	□□□□□ -0.4
CLN3-256	ENST00000637107		A0A087WX48	190 aa		12.52	□□□□□ -0.4
CLN3-256	ENST00000637107	ZNF25	P17030	456 aa	Predicted RBP	12.52	□□□□□ -0.4
CLN3-256	ENST00000637107	BOD1L2	Q8IYS8	172 aa		12.52	□□□□□ -0.4
CLN3-256	ENST00000637107	ZNF876P	Q49A33	203 aa		12.52	□□□□□ -0.41
CLN3-256	ENST00000637107	C2orf66	Q6UXQ4	117 aa		12.52	□□□□□ -0.41
CLN3-256	ENST00000637107	MRPL35	Q9NZE8	188 aa	Known RBP	12.52	□□□□□ -0.41
CLN3-256	ENST00000637107	TRBV6-5	A0A0K0K1A5	114 aa		12.51	□□□□□ -0.41
CLN3-256	ENST00000637107	RPL35A	P18077	110 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-256	ENST00000637107	ZNF56	Q15929	161 aa		12.51	□□□□□ -0.41
CLN3-256	ENST00000637107	COL7A1	Q02388	2944 aa		12.51	□□□□□ -0.41
CLN3-256	ENST00000637107	TRAV12-1	A0A0B4J245	112 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	VCY	O14598	125 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	HTN1	P15515	57 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	G0S2	P27469	103 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	BVES-AS1	Q5T3Y7	98 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	SBSPON	Q8IVN8	264 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	DLEU1	O43261	78 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	MORN3	Q6PF18	240 aa	Predicted RBP	12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	STH	Q8IWL8	128 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	NBEAL2	Q6ZNJ1	2754 aa		12.5	□□□□□ -0.41
CLN3-256	ENST00000637107	HUWE1	Q7Z6Z7	4374 aa	Known RBP	12.49	□□□□□ -0.41
CLN3-256	ENST00000637107		M0QY20	66 aa		12.49	□□□□□ -0.41
CLN3-256	ENST00000637107	NMU	P48645	174 aa		12.49	□□□□□ -0.41
CLN3-256	ENST00000637107	SDHAF1	A6NFY7	115 aa		12.49	□□□□□ -0.41
CLN3-256	ENST00000637107	PCP2	Q8IVA1	136 aa		12.49	□□□□□ -0.41
CLN3-256	ENST00000637107	CLUHP3	Q96NS8	147 aa		12.49	□□□□□ -0.41
CLN3-256	ENST00000637107	B9D2	Q9BPU9	175 aa		12.49	□□□□□ -0.41
CLN3-256	ENST00000637107		H7C1H1	209 aa		12.48	□□□□□ -0.41
CLN3-256	ENST00000637107	ZC2HC1B	Q5TFG8	222 aa		12.48	□□□□□ -0.41
CLN3-256	ENST00000637107	ZFP2	Q6ZN57	461 aa		12.48	□□□□□ -0.41
CLN3-256	ENST00000637107	TRPT1	Q86TN4	253 aa	Known RBP	12.48	□□□□□ -0.41
CLN3-256	ENST00000637107	NEXN-AS1	Q8NBZ9	246 aa		12.48	□□□□□ -0.41
CLN3-256	ENST00000637107	LINC00467	Q9BRT7	94 aa		12.48	□□□□□ -0.41
CLN3-256	ENST00000637107	TMEM208	Q9BTX3	173 aa		12.48	□□□□□ -0.41
CLN3-256	ENST00000637107	IGKV2D-26	A0A0A0MRZ7	120 aa		12.47	□□□□□ -0.41
CLN3-256	ENST00000637107	SIVA1	O15304	175 aa		12.47	□□□□□ -0.41
CLN3-256	ENST00000637107	PRM2	P04554	102 aa		12.47	□□□□□ -0.41
CLN3-256	ENST00000637107	ERAS	Q7Z444	233 aa		12.47	□□□□□ -0.41
CLN3-256	ENST00000637107	KIR2DL4	Q99706	377 aa		12.47	□□□□□ -0.41
CLN3-256	ENST00000637107	TRBV27	A0A0K0K1C4	114 aa		12.47	□□□□□ -0.41
CLN3-256	ENST00000637107	BAALC	Q8WXS3	180 aa		12.47	□□□□□ -0.41
CLN3-256	ENST00000637107	CYSLTR1	Q9Y271	337 aa		12.47	□□□□□ -0.41
CLN3-256	ENST00000637107		F8VRH5	84 aa		12.46	□□□□□ -0.42
CLN3-256	ENST00000637107	PLN	P26678	52 aa		12.46	□□□□□ -0.42
CLN3-256	ENST00000637107	ZNF415	Q09FC8	603 aa		12.46	□□□□□ -0.42
CLN3-256	ENST00000637107	DEFB104A	Q8WTQ1	72 aa		12.46	□□□□□ -0.42
CLN3-256	ENST00000637107	LINC01587	Q99440	93 aa		12.46	□□□□□ -0.42
CLN3-256	ENST00000637107	CHTOP	Q9Y3Y2	248 aa	Known RBP	12.46	□□□□□ -0.42
CLN3-256	ENST00000637107	TG	P01266	2768 aa		12.46	□□□□□ -0.42
CLN3-256	ENST00000637107	LINC01549	A6NIU2	74 aa		12.45	□□□□□ -0.42
CLN3-256	ENST00000637107	INS	P01308	110 aa		12.45	□□□□□ -0.42
CLN3-256	ENST00000637107		M0R2P5	195 aa		12.45	□□□□□ -0.42
CLN3-256	ENST00000637107	TMEM97	Q5BJF2	176 aa		12.45	□□□□□ -0.42
CLN3-256	ENST00000637107	PTH2	Q96A98	100 aa		12.45	□□□□□ -0.42
CLN3-256	ENST00000637107	TP53TG1	Q9Y2A0	90 aa		12.45	□□□□□ -0.42
CLN3-256	ENST00000637107	GAGE1	Q13065	139 aa		12.44	□□□□□ -0.42
CLN3-256	ENST00000637107		Q6ZVH6	145 aa		12.44	□□□□□ -0.42
CLN3-256	ENST00000637107	APOC4	P55056	127 aa		12.43	□□□□□ -0.42
CLN3-256	ENST00000637107	PIK3CD-AS1	Q5SR53	167 aa		12.43	□□□□□ -0.42
CLN3-256	ENST00000637107	C11orf72	Q8NBR9	251 aa		12.43	□□□□□ -0.42
CLN3-256	ENST00000637107	COX11	Q9Y6N1	276 aa		12.43	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms