RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 NXT2Q9NPJ8 142 aaKnown RBP7.2□□□□□ -1.26
UPF1-213ENST00000601981 DKK2Q9UBU2 259 aa7.2□□□□□ -1.26
UPF1-213ENST00000601981 TRAV26-2A0A0B4J265 109 aa7.19□□□□□ -1.26
UPF1-213ENST00000601981 LOC389332A0A1B0GUA5 103 aa7.19□□□□□ -1.26
UPF1-213ENST00000601981 NUPR2A6NF83 97 aa7.19□□□□□ -1.26
UPF1-213ENST00000601981 GAS8-AS1O95177 125 aa7.19□□□□□ -1.26
UPF1-213ENST00000601981 GATA1P15976 413 aaPredicted RBP7.19□□□□□ -1.26
UPF1-213ENST00000601981 DAZ2Q13117 558 aaKnown RBP7.19□□□□□ -1.26
UPF1-213ENST00000601981 ZNF876PQ49A33 203 aa7.19□□□□□ -1.26
UPF1-213ENST00000601981 Q8N8P6 123 aa7.19□□□□□ -1.26
UPF1-213ENST00000601981 C20orf78Q9BR46 151 aa7.19□□□□□ -1.26
UPF1-213ENST00000601981 NOP10Q9NPE3 64 aaKnown RBP7.19□□□□□ -1.26
UPF1-213ENST00000601981 TRAV10A0A0B4J240 114 aa7.18□□□□□ -1.26
UPF1-213ENST00000601981 A8MWV9 139 aa7.18□□□□□ -1.26
UPF1-213ENST00000601981 PRM2P04554 102 aa7.18□□□□□ -1.26
UPF1-213ENST00000601981 NANOS2P60321 138 aaKnown RBP7.18□□□□□ -1.26
UPF1-213ENST00000601981 RPL32P62910 135 aaKnown RBP7.18□□□□□ -1.26
UPF1-213ENST00000601981 RASL10AQ92737 203 aa7.18□□□□□ -1.26
UPF1-213ENST00000601981 JPT2Q9H910 190 aa7.18□□□□□ -1.26
UPF1-213ENST00000601981 NIT2Q9NQR4 276 aa7.18□□□□□ -1.26
UPF1-213ENST00000601981 CELA1Q9UNI1 258 aa7.18□□□□□ -1.26
UPF1-213ENST00000601981 KLK5Q9Y337 293 aaPredicted RBP7.18□□□□□ -1.26
UPF1-213ENST00000601981 DNAH7Q8WXX0 4024 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 IGLV2-18A0A075B6J9 118 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 A0A087WWL8 130 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 PLAC8L1A1L4L8 177 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 LEPROTL1O95214 131 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 CRYGDP07320 174 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 DEFB130BP0DP73 79 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 DEFB130AP0DP74 79 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 PMCHL1Q16048 86 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 LGALS9BQ3B8N2 356 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 SUMO4Q6EEV6 95 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 PHLDA1Q8WV24 401 aaPredicted RBP7.17□□□□□ -1.26
UPF1-213ENST00000601981 SMIM2Q9BVW6 85 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 HSPB8Q9UJY1 196 aa7.17□□□□□ -1.26
UPF1-213ENST00000601981 MUC4Q99102 2169 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 TRGV2A0A075B6R0 118 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 A0A096LNJ9 63 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 TRGV1A0A0A0MS02 117 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 K7EMI3 77 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 RHODO00212 210 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 SCGB1D1O95968 90 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 HBDP02042 147 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 ATP5G1P05496 136 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 C3orf79P0CE67 100 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 KRTDAPP60985 99 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 SUMO2P61956 95 aaKnown RBP7.16□□□□□ -1.26
UPF1-213ENST00000601981 C12orf74Q32Q52 190 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 FAM74A4Q5TZK3 123 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 Q6ZTC4 211 aa7.16□□□□□ -1.26
UPF1-213ENST00000601981 TRBV6-5A0A0K0K1A5 114 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 GAGE12BA1L429 117 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 F5H697 171 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 GAGE7O76087 117 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 GAGE12FP0CL80 117 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 GAGE12GP0CL81 117 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 GAGE12IP0CL82 117 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 BTF3P20290 206 aaKnown RBP7.15□□□□□ -1.26
UPF1-213ENST00000601981 ZNF56Q15929 161 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 ZFAND6Q6FIF0 208 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 UFSP1Q6NVU6 142 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 CDPF1Q6NVV7 123 aa7.15□□□□□ -1.26
UPF1-213ENST00000601981 CEMP1Q6PRD7 247 aaPredicted RBP7.15□□□□□ -1.26
UPF1-213ENST00000601981 RPL39LQ96EH5 51 aaKnown RBP7.15□□□□□ -1.26
UPF1-213ENST00000601981 DEFB131BA0A096LNP1 70 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 H7C1H1 209 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 M0QY20 66 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 RS1O15537 224 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 HTN3P15516 51 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 FCER1GP30273 86 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 S100A12P80511 92 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 LAGE3Q14657 143 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 CFAP126Q5VTH2 177 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 TEX43Q6ZNM6 134 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 Q6ZTI0 123 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 Q8N976 141 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 TMEM70Q9BUB7 260 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 ST20Q9HBF5 79 aa7.14□□□□□ -1.27
UPF1-213ENST00000601981 MRPL16Q9NX20 251 aaKnown RBP7.14□□□□□ -1.27
UPF1-213ENST00000601981 TCTAP57738 103 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 ORMDL2Q53FV1 153 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 CASC10Q5T4H9 136 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 PET117Q6UWS5 81 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 ZFP2Q6ZN57 461 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 LINC00173Q6ZV60 143 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 LINC00612Q8N6U2 182 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 C18orf15Q96N68 181 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 MAP1LC3CQ9BXW4 147 aa7.13□□□□□ -1.27
UPF1-213ENST00000601981 C20orf202A1L168 122 aa7.12□□□□□ -1.27
UPF1-213ENST00000601981 F5H768 121 aa7.12□□□□□ -1.27
UPF1-213ENST00000601981 SYS1-DBNDD2H3BUS1 97 aa7.12□□□□□ -1.27
UPF1-213ENST00000601981 POLR2KP53803 58 aaKnown RBP7.12□□□□□ -1.27
UPF1-213ENST00000601981 SPATA12Q7Z6I5 190 aa7.12□□□□□ -1.27
UPF1-213ENST00000601981 TRAV4A0A0B4J268 109 aa7.11□□□□□ -1.27
UPF1-213ENST00000601981 TRBV27A0A0K0K1C4 114 aa7.11□□□□□ -1.27
UPF1-213ENST00000601981 SDHAF1A6NFY7 115 aa7.11□□□□□ -1.27
UPF1-213ENST00000601981 IGLL5B9A064 214 aa7.11□□□□□ -1.27
UPF1-213ENST00000601981 VCYO14598 125 aa7.11□□□□□ -1.27
UPF1-213ENST00000601981 TCAPO15273 167 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms