RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 RBMY1CP0DJD4 496 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 RIPPLY3P57055 190 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 DEFB131AP59861 70 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 RBMY1FQ15415 496 aaKnown RBP7.43□□□□□ -1.22
VPS53-220ENST00000576149 ZNF876PQ49A33 203 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 MORN3Q6PF18 240 aaPredicted RBP7.43□□□□□ -1.22
VPS53-220ENST00000576149 CEND1Q8N111 149 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 RAB37Q96AX2 223 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 PEMTQ9UBM1 199 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 GAGE10A6NGK3 116 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 E9PLD3 99 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 ZNF56Q15929 161 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 ZNF256Q9Y2P7 627 aaPredicted RBP7.42□□□□□ -1.22
VPS53-220ENST00000576149 AGRNO00468 2067 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 H3BMM0 161 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 RPL39P62891 51 aaKnown RBP7.42□□□□□ -1.22
VPS53-220ENST00000576149 TAL2Q16559 108 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 DGAT2L7PQ6IED9 249 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 UFSP1Q6NVU6 142 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 TRPT1Q86TN4 253 aaKnown RBP7.42□□□□□ -1.22
VPS53-220ENST00000576149 NAV2Q8IVL1 2488 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 TMEM86BQ8N661 226 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 DEFB104AQ8WTQ1 72 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 TMEM141Q96I45 108 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 TIMM17AQ99595 171 aa7.42□□□□□ -1.22
VPS53-220ENST00000576149 MYMXA0A1B0GTQ4 84 aa7.41□□□□□ -1.22
VPS53-220ENST00000576149 GTF2H5Q6ZYL4 71 aa7.41□□□□□ -1.22
VPS53-220ENST00000576149 TMEM61Q8N0U2 210 aa7.41□□□□□ -1.22
VPS53-220ENST00000576149 DUX3Q96PT4 197 aa7.41□□□□□ -1.22
VPS53-220ENST00000576149 NAA38Q9BRA0 125 aaKnown RBP7.41□□□□□ -1.22
VPS53-220ENST00000576149 CKS1BP61024 79 aa7.41□□□□□ -1.22
VPS53-220ENST00000576149 PMVKQ15126 192 aa7.41□□□□□ -1.22
VPS53-220ENST00000576149 DLX4Q92988 240 aaPredicted RBP7.41□□□□□ -1.22
VPS53-220ENST00000576149 MXRA5Q9NR99 2828 aa7.41□□□□□ -1.22
VPS53-220ENST00000576149 IGLV4-69A0A075B6H9 119 aa7.4□□□□□ -1.22
VPS53-220ENST00000576149 A0A1W2PPM0 123 aa7.4□□□□□ -1.22
VPS53-220ENST00000576149 GAGE12BA1L429 117 aa7.4□□□□□ -1.22
VPS53-220ENST00000576149 RBMY1BA6NDE4 496 aaKnown RBP7.4□□□□□ -1.22
VPS53-220ENST00000576149 RBMY1EA6NEQ0 496 aaKnown RBP7.4□□□□□ -1.22
VPS53-220ENST00000576149 RBMY1DP0C7P1 496 aaKnown RBP7.4□□□□□ -1.22
VPS53-220ENST00000576149 PHLDA1Q8WV24 401 aaPredicted RBP7.4□□□□□ -1.22
VPS53-220ENST00000576149 PRADC1Q9BSG0 188 aa7.4□□□□□ -1.22
VPS53-220ENST00000576149 CST9LQ9H4G1 147 aa7.4□□□□□ -1.22
VPS53-220ENST00000576149 K7EP34 96 aa7.4□□□□□ -1.23
VPS53-220ENST00000576149 RHOHQ15669 191 aa7.4□□□□□ -1.23
VPS53-220ENST00000576149 NSUN5P1Q3KNT7 163 aa7.4□□□□□ -1.23
VPS53-220ENST00000576149 OCIAD2Q56VL3 154 aa7.4□□□□□ -1.23
VPS53-220ENST00000576149 PAPPA-AS1Q5QFB9 102 aa7.4□□□□□ -1.23
VPS53-220ENST00000576149 Q6ZSV7 163 aa7.4□□□□□ -1.23
VPS53-220ENST00000576149 KLHL30-AS1Q8NEE0 82 aa7.4□□□□□ -1.23
VPS53-220ENST00000576149 TRBV7-3A0A075B6L6 115 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 C11orf86A6NJI1 115 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 HIST1H4GQ99525 98 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 SPAG8Q99932 426 aaPredicted RBP7.39□□□□□ -1.23
VPS53-220ENST00000576149 NHP2Q9NX24 153 aaKnown RBP7.39□□□□□ -1.23
VPS53-220ENST00000576149 CENPEQ02224 2701 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 CREBBPQ92793 2442 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 K7ERJ3 54 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 HTN1P15515 57 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 DEFB114Q30KQ6 69 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 SAMD5Q5TGI4 173 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 TEX29Q8N6K0 151 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 WFDC11Q8NEX6 87 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 DYNLRB2Q8TF09 96 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 MAP6D1Q9H9H5 199 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 EDA2RQ9HAV5 297 aa7.39□□□□□ -1.23
VPS53-220ENST00000576149 ABCA12Q86UK0 2595 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 I3L3M4 83 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 P0DMU3 169 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 FAM231AP0DMU4 169 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 FAM231CP0DMU5 169 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 ZNF469Q96JG9 3925 aaPredicted RBP7.38□□□□□ -1.23
VPS53-220ENST00000576149 SORL1Q92673 2214 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 FABP2P12104 132 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 EMP1P54849 157 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 CD300EQ496F6 205 aaPredicted RBP7.38□□□□□ -1.23
VPS53-220ENST00000576149 HIST2H2BDQ6DRA6 164 aa7.38□□□□□ -1.23
VPS53-220ENST00000576149 TEX15Q9BXT5 2789 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 DNAJC9-AS1A6NH13 148 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 PIK3CD-AS1Q5SR53 167 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 C20orf203Q8NBC4 194 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 SPCS1Q9Y6A9 102 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 ZNF815PA8K554 130 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 F5H768 121 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 M0R2P5 195 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 HERVK_113P61574 105 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 MTURNQ8N3F0 131 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 OR5A1Q8NGJ0 315 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 MRAPQ8TCY5 172 aa7.37□□□□□ -1.23
VPS53-220ENST00000576149 A8MWV9 139 aa7.36□□□□□ -1.23
VPS53-220ENST00000576149 PRM2P04554 102 aa7.36□□□□□ -1.23
VPS53-220ENST00000576149 ZNF415Q09FC8 603 aa7.36□□□□□ -1.23
VPS53-220ENST00000576149 C12orf74Q32Q52 190 aa7.36□□□□□ -1.23
VPS53-220ENST00000576149 ZNRF2Q8NHG8 242 aa7.36□□□□□ -1.23
VPS53-220ENST00000576149 LINC00467Q9BRT7 94 aa7.36□□□□□ -1.23
VPS53-220ENST00000576149 A0A1B0GWB2 263 aa7.36□□□□□ -1.23
VPS53-220ENST00000576149 IGHV3-73A0A0B4J1V6 119 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 PROK1P58294 105 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 NFE4Q86UQ8 179 aa7.35□□□□□ -1.23
VPS53-220ENST00000576149 PLEKHB2Q96CS7 222 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms