RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 SPATA25Q9BR10 227 aa13.58□□□□□ -0.24
CSPG4P13-201ENST00000565545 NXT2Q9NPJ8 142 aaKnown RBP13.58□□□□□ -0.24
CSPG4P13-201ENST00000565545 DKK2Q9UBU2 259 aa13.58□□□□□ -0.24
CSPG4P13-201ENST00000565545 TRBV6-5A0A0K0K1A5 114 aa13.57□□□□□ -0.24
CSPG4P13-201ENST00000565545 LINC00614P0C842 121 aa13.57□□□□□ -0.24
CSPG4P13-201ENST00000565545 RPL32P62910 135 aaKnown RBP13.57□□□□□ -0.24
CSPG4P13-201ENST00000565545 FAM222AQ5U5X8 452 aa13.57□□□□□ -0.24
CSPG4P13-201ENST00000565545 ZMAT4Q9H898 229 aa13.57□□□□□ -0.24
CSPG4P13-201ENST00000565545 SPART-AS1P0CW21 52 aa13.56□□□□□ -0.24
CSPG4P13-201ENST00000565545 PMCHP20382 165 aa13.56□□□□□ -0.24
CSPG4P13-201ENST00000565545 SUMO2P61956 95 aaKnown RBP13.56□□□□□ -0.24
CSPG4P13-201ENST00000565545 FA2HQ7L5A8 372 aa13.56□□□□□ -0.24
CSPG4P13-201ENST00000565545 HIST3H2BBQ8N257 126 aa13.56□□□□□ -0.24
CSPG4P13-201ENST00000565545 ZNF479Q96JC4 524 aa13.56□□□□□ -0.24
CSPG4P13-201ENST00000565545 ST20Q9HBF5 79 aa13.56□□□□□ -0.24
CSPG4P13-201ENST00000565545 NIT2Q9NQR4 276 aa13.56□□□□□ -0.24
CSPG4P13-201ENST00000565545 IGHV3-73A0A0B4J1V6 119 aa13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 LOC389332A0A1B0GUA5 103 aa13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 S100A2P29034 98 aa13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 LINC00310P59036 64 aa13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 RNASEKQ6P5S7 137 aaKnown RBP13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 Q8N8P6 123 aa13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 RPL39LQ96EH5 51 aaKnown RBP13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 DNAJC30Q96LL9 226 aa13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 TM2D3Q9BRN9 247 aa13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 C11orf68Q9H3H3 251 aaKnown RBP13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 DYNC2H1Q8NCM8 4307 aaKnown RBP13.55□□□□□ -0.24
CSPG4P13-201ENST00000565545 LCE6AA0A183 80 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 LINC01546A6NGU7 62 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 HSBP1O75506 76 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 DEFB130BP0DP73 79 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 DEFB130AP0DP74 79 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 IFI27P40305 119 aaPredicted RBP13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 URB1-AS1Q96HZ7 61 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 SMIM2Q9BVW6 85 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 RETNQ9HD89 108 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 AP5S1Q9NUS5 200 aa13.54□□□□□ -0.24
CSPG4P13-201ENST00000565545 RYR2Q92736 4967 aa13.53□□□□□ -0.24
CSPG4P13-201ENST00000565545 K7EMI3 77 aa13.53□□□□□ -0.24
CSPG4P13-201ENST00000565545 NUPR1O60356 82 aa13.53□□□□□ -0.24
CSPG4P13-201ENST00000565545 ZFAND6Q6FIF0 208 aa13.53□□□□□ -0.24
CSPG4P13-201ENST00000565545 PACRGQ96M98 296 aaPredicted RBP13.53□□□□□ -0.24
CSPG4P13-201ENST00000565545 HUWE1Q7Z6Z7 4374 aaKnown RBP13.52□□□□□ -0.24
CSPG4P13-201ENST00000565545 IGLV2-18A0A075B6J9 118 aa13.52□□□□□ -0.25
CSPG4P13-201ENST00000565545 TRBV10-1A0A0K0K1A3 114 aa13.52□□□□□ -0.25
CSPG4P13-201ENST00000565545 TRBV6-4A0A1B0GX49 114 aa13.52□□□□□ -0.25
CSPG4P13-201ENST00000565545 DEFB4AO15263 64 aa13.52□□□□□ -0.25
CSPG4P13-201ENST00000565545 POLR2KP53803 58 aaKnown RBP13.52□□□□□ -0.25
CSPG4P13-201ENST00000565545 DAD1P61803 113 aa13.52□□□□□ -0.25
CSPG4P13-201ENST00000565545 Q6ZSN1 163 aa13.52□□□□□ -0.25
CSPG4P13-201ENST00000565545 TMEM18Q96B42 140 aa13.52□□□□□ -0.25
CSPG4P13-201ENST00000565545 TRGV4A0A0C4DH28 118 aa13.51□□□□□ -0.25
CSPG4P13-201ENST00000565545 LOC105371267A0A1B0GV96 52 aa13.51□□□□□ -0.25
CSPG4P13-201ENST00000565545 VCYO14598 125 aa13.51□□□□□ -0.25
CSPG4P13-201ENST00000565545 TNFRSF18Q9Y5U5 241 aa13.51□□□□□ -0.25
CSPG4P13-201ENST00000565545 K7EQD1 137 aa13.5□□□□□ -0.25
CSPG4P13-201ENST00000565545 FHL2Q14192 279 aa13.5□□□□□ -0.25
CSPG4P13-201ENST00000565545 PDZD11Q5EBL8 140 aa13.5□□□□□ -0.25
CSPG4P13-201ENST00000565545 TMEM70Q9BUB7 260 aa13.5□□□□□ -0.25
CSPG4P13-201ENST00000565545 SDHAF1A6NFY7 115 aa13.49□□□□□ -0.25
CSPG4P13-201ENST00000565545 TCAPO15273 167 aa13.49□□□□□ -0.25
CSPG4P13-201ENST00000565545 NEXN-AS1Q8NBZ9 246 aa13.49□□□□□ -0.25
CSPG4P13-201ENST00000565545 TRBV27A0A0K0K1C4 114 aa13.48□□□□□ -0.25
CSPG4P13-201ENST00000565545 AMTP48728 403 aa13.48□□□□□ -0.25
CSPG4P13-201ENST00000565545 RHOHQ15669 191 aa13.48□□□□□ -0.25
CSPG4P13-201ENST00000565545 SLC25A29Q8N8R3 303 aa13.48□□□□□ -0.25
CSPG4P13-201ENST00000565545 HIST1H2BLQ99880 126 aa13.48□□□□□ -0.25
CSPG4P13-201ENST00000565545 CELA1Q9UNI1 258 aa13.48□□□□□ -0.25
CSPG4P13-201ENST00000565545 IFITM10A6NMD0 228 aa13.47□□□□□ -0.25
CSPG4P13-201ENST00000565545 ATP5G1P05496 136 aa13.47□□□□□ -0.25
CSPG4P13-201ENST00000565545 LAGE3Q14657 143 aa13.47□□□□□ -0.25
CSPG4P13-201ENST00000565545 KIR2DL4Q99706 377 aa13.47□□□□□ -0.25
CSPG4P13-201ENST00000565545 PRADC1Q9BSG0 188 aa13.47□□□□□ -0.25
CSPG4P13-201ENST00000565545 I3L3M4 83 aa13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 P0DMU3 169 aa13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 FAM231AP0DMU4 169 aa13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 FAM231CP0DMU5 169 aa13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 FABP4P15090 132 aa13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 RPL36AP83881 106 aaKnown RBP13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 ORMDL2Q53FV1 153 aa13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 RPL36ALQ969Q0 106 aaKnown RBP13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 HHLA3Q9XRX5 114 aa13.46□□□□□ -0.25
CSPG4P13-201ENST00000565545 SACSQ9NZJ4 4579 aa13.46□□□□□ -0.26
CSPG4P13-201ENST00000565545 TRBV7-3A0A075B6L6 115 aa13.45□□□□□ -0.26
CSPG4P13-201ENST00000565545 IGHV1-24A0A0C4DH33 117 aa13.45□□□□□ -0.26
CSPG4P13-201ENST00000565545 G0S2P27469 103 aa13.45□□□□□ -0.26
CSPG4P13-201ENST00000565545 FAM19A2Q8N3H0 131 aa13.45□□□□□ -0.26
CSPG4P13-201ENST00000565545 PRO0255Q9UI72 69 aa13.45□□□□□ -0.26
CSPG4P13-201ENST00000565545 BIRC6Q9NR09 4857 aa13.44□□□□□ -0.26
CSPG4P13-201ENST00000565545 FCER1GP30273 86 aa13.44□□□□□ -0.26
CSPG4P13-201ENST00000565545 A0A0J9YWU9 116 aa13.43□□□□□ -0.26
CSPG4P13-201ENST00000565545 HBDP02042 147 aa13.43□□□□□ -0.26
CSPG4P13-201ENST00000565545 CRYBA4P53673 196 aa13.43□□□□□ -0.26
CSPG4P13-201ENST00000565545 C12orf74Q32Q52 190 aa13.43□□□□□ -0.26
CSPG4P13-201ENST00000565545 ZNRF2Q8NHG8 242 aa13.43□□□□□ -0.26
CSPG4P13-201ENST00000565545 EPPK1P58107 5090 aaKnown RBP13.43□□□□□ -0.26
CSPG4P13-201ENST00000565545 DNAH7Q8WXX0 4024 aa13.42□□□□□ -0.26
CSPG4P13-201ENST00000565545 LINC01549A6NIU2 74 aa13.42□□□□□ -0.26
CSPG4P13-201ENST00000565545 DAZ4Q86SG3 579 aaKnown RBP13.42□□□□□ -0.26
CSPG4P13-201ENST00000565545 DAZ3Q9NR90 486 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms