RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 RBAKDNA6NC62 111 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 FBLL1A6NHQ2 334 aaKnown RBP6.23□□□□□ -1.41
USP3-208ENST00000558285 FAM229AH3BQW9 127 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 H3BTX0 84 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 SLC17A3O00476 420 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 P0DMU3 169 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 FAM231AP0DMU4 169 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 FAM231CP0DMU5 169 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 DEFB1P60022 68 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 SLAQ13239 276 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 FAM222AQ5U5X8 452 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 Q6ZTC4 211 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 MIR17HGQ75NE6 70 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 C1orf158Q8N1D5 194 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 NHLRC2Q8NBF2 726 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 C17orf77Q96MU5 243 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 NDFIP1Q9BT67 221 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 GTSF1LQ9H1H1 148 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 GEMIN7Q9H840 131 aaKnown RBP6.23□□□□□ -1.41
USP3-208ENST00000558285 TMEM167BQ9NRX6 74 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 DKK2Q9UBU2 259 aa6.23□□□□□ -1.41
USP3-208ENST00000558285 TIMM8BQ9Y5J9 83 aaPredicted RBP6.23□□□□□ -1.41
USP3-208ENST00000558285 LEPROTL1O95214 131 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 PYYP10082 97 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 HTN1P15515 57 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 LINC01545Q5VT33 79 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 MORN5Q5VZ52 161 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 C2orf91Q6ZV80 131 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 ERASQ7Z444 233 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 C1orf43Q9BWL3 253 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 VCX2Q9H322 139 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 OTORQ9NRC9 128 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 LENEPQ9Y5L5 61 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 IGHV4-4A0A075B6R2 117 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 TRAV12-2A0A075B6T6 113 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 ARL14EPLP0DKL9 152 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 GCHFRP30047 84 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 ZNF138P52744 262 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 TCL1AP56279 114 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 C12orf74Q32Q52 190 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 GCSAMLQ5JQS6 135 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 RNASEKQ6P5S7 137 aaKnown RBP6.22□□□□□ -1.41
USP3-208ENST00000558285 C9orf47Q6ZRZ4 202 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 C15orf53Q8NAA6 179 aa6.22□□□□□ -1.41
USP3-208ENST00000558285 H3BUT2 72 aa6.21□□□□□ -1.42
USP3-208ENST00000558285 ATP5G1P05496 136 aa6.21□□□□□ -1.42
USP3-208ENST00000558285 KIAA1644Q3SXP7 199 aa6.21□□□□□ -1.42
USP3-208ENST00000558285 CENPWQ5EE01 88 aa6.21□□□□□ -1.42
USP3-208ENST00000558285 IBA57Q5T440 356 aaKnown RBP6.21□□□□□ -1.42
USP3-208ENST00000558285 UBE2DNLQ8IWF7 75 aa6.21□□□□□ -1.42
USP3-208ENST00000558285 FXYD5Q96DB9 178 aa6.21□□□□□ -1.42
USP3-208ENST00000558285 FAM167A-AS1Q96KT0 104 aa6.21□□□□□ -1.42
USP3-208ENST00000558285 Q9H3A6 140 aa6.21□□□□□ -1.42
USP3-208ENST00000558285 HUWE1Q7Z6Z7 4374 aaKnown RBP6.21□□□□□ -1.42
USP3-208ENST00000558285 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.2□□□□□ -1.42
USP3-208ENST00000558285 HTN3P15516 51 aa6.2□□□□□ -1.42
USP3-208ENST00000558285 RPL24P83731 157 aaKnown RBP6.2□□□□□ -1.42
USP3-208ENST00000558285 KIR3DS1Q14943 382 aa6.2□□□□□ -1.42
USP3-208ENST00000558285 EXOC3-AS1Q8N2X6 119 aa6.2□□□□□ -1.42
USP3-208ENST00000558285 LINC00467Q9BRT7 94 aa6.2□□□□□ -1.42
USP3-208ENST00000558285 KRTAP17-1Q9BYP8 105 aa6.2□□□□□ -1.42
USP3-208ENST00000558285 CYSLTR1Q9Y271 337 aa6.2□□□□□ -1.42
USP3-208ENST00000558285 AGRNO00468 2067 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 TRAV12-3A0A0B4J271 114 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 hDV102S1A0JD36 115 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 M0R3E3 92 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 CT45A10P0DMU9 189 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 DEFB130BP0DP73 79 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 DEFB130AP0DP74 79 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 ATP6V0E2Q8NHE4 81 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 VGLL1Q99990 258 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 ZNF492Q9P255 531 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 CELA1Q9UNI1 258 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 IGHV1-24A0A0C4DH33 117 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 KLLNB2CW77 178 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 PRAC2D3DTV9 90 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 SMIM13P0DJ93 91 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 RNASE4P34096 147 aaKnown RBP6.19□□□□□ -1.42
USP3-208ENST00000558285 BOD1L2Q8IYS8 172 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 AGPAT4-IT1Q9H0P7 198 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 SPANXB1Q9NS25 103 aaPredicted RBP6.19□□□□□ -1.42
USP3-208ENST00000558285 HIGD1BQ9P298 99 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 ERG28Q9UKR5 140 aa6.19□□□□□ -1.42
USP3-208ENST00000558285 TRGV11A0A075B6L2 103 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 A0A1B0GXF2 115 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 A0A1W2PRE2 83 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 PGPA6NDG6 321 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 F5H768 121 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 FGF6P10767 208 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 ZNF415Q09FC8 603 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 GAGE5Q13069 117 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 GAGE6Q13070 117 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 ANXA2RQ3ZCQ2 193 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 FAM159AQ6UWV7 190 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 APLNQ9ULZ1 77 aa6.18□□□□□ -1.42
USP3-208ENST00000558285 TRGV2A0A075B6R0 118 aa6.17□□□□□ -1.42
USP3-208ENST00000558285 IGHV1OR15-1A0A075B7D0 117 aa6.17□□□□□ -1.42
USP3-208ENST00000558285 IGKV2-40A0A087WW87 121 aaPredicted RBP6.17□□□□□ -1.42
USP3-208ENST00000558285 IGKV2D-40P01614 121 aaPredicted RBP6.17□□□□□ -1.42
USP3-208ENST00000558285 DAZ2Q13117 558 aaKnown RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms