RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 RPS10P46783 165 aaKnown RBP6.69□□□□□ -1.34
LIMA1-211ENST00000552338 TCTAP57738 103 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 FABP9Q0Z7S8 132 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 ZNF56Q15929 161 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 SH2D6Q7Z4S9 175 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 NEXN-AS1Q8NBZ9 246 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 PRADC1Q9BSG0 188 aa6.69□□□□□ -1.34
LIMA1-211ENST00000552338 IGLV2-18A0A075B6J9 118 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 TRBV27A0A0K0K1C4 114 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 LINC01546A6NGU7 62 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 F5H697 171 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 F5H768 121 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 PAX4O43316 350 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 GAS8-AS1O95177 125 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 TRGC2P03986 189 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 MGPP08493 103 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 TIRAPP58753 221 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 UBE2D3P61077 147 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 UBE2D2P62837 147 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 C15orf53Q8NAA6 179 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 PHLDA1Q8WV24 401 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-211ENST00000552338 STAB2Q8WWQ8 2551 aa6.68□□□□□ -1.34
LIMA1-211ENST00000552338 IGHV3-73A0A0B4J1V6 119 aa6.67□□□□□ -1.34
LIMA1-211ENST00000552338 TRAV26-2A0A0B4J265 109 aa6.67□□□□□ -1.34
LIMA1-211ENST00000552338 K7EMI3 77 aa6.67□□□□□ -1.34
LIMA1-211ENST00000552338 TNFRSF6BO95407 300 aa6.67□□□□□ -1.34
LIMA1-211ENST00000552338 LORP23490 312 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-211ENST00000552338 SUMO2P61956 95 aaKnown RBP6.67□□□□□ -1.34
LIMA1-211ENST00000552338 RPL36AP83881 106 aaKnown RBP6.67□□□□□ -1.34
LIMA1-211ENST00000552338 Q0VG73 95 aa6.67□□□□□ -1.34
LIMA1-211ENST00000552338 MRPL23Q16540 153 aaKnown RBP6.67□□□□□ -1.34
LIMA1-211ENST00000552338 CEMP1Q6PRD7 247 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-211ENST00000552338 DAZ4Q86SG3 579 aaKnown RBP6.67□□□□□ -1.34
LIMA1-211ENST00000552338 RPL36ALQ969Q0 106 aaKnown RBP6.67□□□□□ -1.34
LIMA1-211ENST00000552338 PRELID3AQ96N28 172 aa6.67□□□□□ -1.34
LIMA1-211ENST00000552338 WWC2-AS2Q96NR7 200 aa6.67□□□□□ -1.34
LIMA1-211ENST00000552338 DAZ3Q9NR90 486 aaKnown RBP6.67□□□□□ -1.34
LIMA1-211ENST00000552338 Q9UF83 564 aa6.67□□□□□ -1.34
LIMA1-211ENST00000552338 NUPR2A6NF83 97 aa6.66□□□□□ -1.34
LIMA1-211ENST00000552338 NPYP01303 97 aa6.66□□□□□ -1.34
LIMA1-211ENST00000552338 KIAA1644Q3SXP7 199 aa6.66□□□□□ -1.34
LIMA1-211ENST00000552338 OR10J3Q5JRS4 329 aa6.66□□□□□ -1.34
LIMA1-211ENST00000552338 RPL39LQ96EH5 51 aaKnown RBP6.66□□□□□ -1.34
LIMA1-211ENST00000552338 TMEM70Q9BUB7 260 aa6.66□□□□□ -1.34
LIMA1-211ENST00000552338 GTSF1LQ9H1H1 148 aa6.66□□□□□ -1.34
LIMA1-211ENST00000552338 A0A096LPF7 62 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 SDHAF1A6NFY7 115 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 SMKR1H3BMG3 65 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 VCYO14598 125 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 TCAPO15273 167 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 NCR2O95944 276 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 P0DMU3 169 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 FAM231AP0DMU4 169 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 FAM231CP0DMU5 169 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 GYPEP15421 78 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 TMEM97Q5BJF2 176 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 ZNRF2Q8NHG8 242 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 C18orf32Q8TCD1 76 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 ST20Q9HBF5 79 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 NXT2Q9NPJ8 142 aaKnown RBP6.65□□□□□ -1.34
LIMA1-211ENST00000552338 TNFRSF18Q9Y5U5 241 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 ICOSQ9Y6W8 199 aa6.65□□□□□ -1.34
LIMA1-211ENST00000552338 DNAH7Q8WXX0 4024 aa6.64□□□□□ -1.35
LIMA1-211ENST00000552338 LOC100131303A0A0U1RQF7 123 aa6.64□□□□□ -1.35
LIMA1-211ENST00000552338 SRIP30626 198 aa6.64□□□□□ -1.35
LIMA1-211ENST00000552338 COA6Q5JTJ3 125 aaKnown RBP6.64□□□□□ -1.35
LIMA1-211ENST00000552338 NEGR1Q7Z3B1 354 aa6.64□□□□□ -1.35
LIMA1-211ENST00000552338 Q8N8P6 123 aa6.64□□□□□ -1.35
LIMA1-211ENST00000552338 MUC7Q8TAX7 377 aa6.64□□□□□ -1.35
LIMA1-211ENST00000552338 SMIM2Q9BVW6 85 aa6.64□□□□□ -1.35
LIMA1-211ENST00000552338 MAP1LC3AQ9H492 121 aa6.64□□□□□ -1.35
LIMA1-211ENST00000552338 C1orf196B1AJZ1 125 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 I3L3M4 83 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BKO60814 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BJP06899 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BOP23527 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BBP33778 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BDP58876 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BCP62807 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST2H2BEQ16778 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-211ENST00000552338 LINC00528Q8N1L1 170 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 ATP6V0E2Q8NHE4 81 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BHQ93079 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 URB1-AS1Q96HZ7 61 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BNQ99877 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 HIST1H2BMQ99879 126 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 APLNQ9ULZ1 77 aa6.63□□□□□ -1.35
LIMA1-211ENST00000552338 KLK5Q9Y337 293 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-211ENST00000552338 DYNC2H1Q8NCM8 4307 aaKnown RBP6.62□□□□□ -1.35
LIMA1-211ENST00000552338 A0A0J9YY99 117 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 GAGE12JA6NER3 117 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 C3orf84H3BNL1 204 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 ESDP10768 282 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 HTN3P15516 51 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 GAGE1Q13065 139 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 GAGE4Q13068 117 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 GAGE5Q13069 117 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 GAGE13Q4V321 117 aa6.62□□□□□ -1.35
LIMA1-211ENST00000552338 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms