RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 A0A0J9YY99 117 aa13.24□□□□□ -0.29
TNFRSF1A-213ENST00000540022 LOC100131303A0A0U1RQF7 123 aa13.24□□□□□ -0.29
TNFRSF1A-213ENST00000540022 TRGC2P03986 189 aa13.24□□□□□ -0.29
TNFRSF1A-213ENST00000540022 RHOHQ15669 191 aa13.24□□□□□ -0.29
TNFRSF1A-213ENST00000540022 PHLDA1Q8WV24 401 aaPredicted RBP13.24□□□□□ -0.29
TNFRSF1A-213ENST00000540022 RPL39LQ96EH5 51 aaKnown RBP13.24□□□□□ -0.29
TNFRSF1A-213ENST00000540022 TENM2Q9NT68 2774 aa13.24□□□□□ -0.29
TNFRSF1A-213ENST00000540022 H7C1H1 209 aa13.23□□□□□ -0.29
TNFRSF1A-213ENST00000540022 PAX4O43316 350 aa13.23□□□□□ -0.29
TNFRSF1A-213ENST00000540022 ORMDL3Q8N138 153 aa13.23□□□□□ -0.29
TNFRSF1A-213ENST00000540022 PPBPP02775 128 aa13.23□□□□□ -0.29
TNFRSF1A-213ENST00000540022 NRACQ8N912 160 aa13.23□□□□□ -0.29
TNFRSF1A-213ENST00000540022 NEXN-AS1Q8NBZ9 246 aa13.23□□□□□ -0.29
TNFRSF1A-213ENST00000540022 PRADC1Q9BSG0 188 aa13.23□□□□□ -0.29
TNFRSF1A-213ENST00000540022 PHOX2AO14813 284 aa13.22□□□□□ -0.29
TNFRSF1A-213ENST00000540022 ZFAND6Q6FIF0 208 aa13.22□□□□□ -0.29
TNFRSF1A-213ENST00000540022 PRELID3AQ96N28 172 aa13.22□□□□□ -0.29
TNFRSF1A-213ENST00000540022 NIT2Q9NQR4 276 aa13.22□□□□□ -0.29
TNFRSF1A-213ENST00000540022 TRBV10-1A0A0K0K1A3 114 aa13.21□□□□□ -0.29
TNFRSF1A-213ENST00000540022 NPYP01303 97 aa13.21□□□□□ -0.29
TNFRSF1A-213ENST00000540022 OR10J3Q5JRS4 329 aa13.21□□□□□ -0.29
TNFRSF1A-213ENST00000540022 ALKBH7Q9BT30 221 aaPredicted RBP13.21□□□□□ -0.29
TNFRSF1A-213ENST00000540022 RYR2Q92736 4967 aa13.21□□□□□ -0.29
TNFRSF1A-213ENST00000540022 GAGE12JA6NER3 117 aa13.2□□□□□ -0.3
TNFRSF1A-213ENST00000540022 TNFRSF6BO95407 300 aa13.2□□□□□ -0.3
TNFRSF1A-213ENST00000540022 GYPEP15421 78 aa13.2□□□□□ -0.3
TNFRSF1A-213ENST00000540022 GAGE1Q13065 139 aa13.2□□□□□ -0.3
TNFRSF1A-213ENST00000540022 GAGE4Q13068 117 aa13.2□□□□□ -0.3
TNFRSF1A-213ENST00000540022 GAGE5Q13069 117 aa13.2□□□□□ -0.3
TNFRSF1A-213ENST00000540022 GAGE13Q4V321 117 aa13.2□□□□□ -0.3
TNFRSF1A-213ENST00000540022 SRIP30626 198 aa13.19□□□□□ -0.3
TNFRSF1A-213ENST00000540022 ZNRF2Q8NHG8 242 aa13.19□□□□□ -0.3
TNFRSF1A-213ENST00000540022 TRBV6-5A0A0K0K1A5 114 aa13.18□□□□□ -0.3
TNFRSF1A-213ENST00000540022 TRBV7-3A0A075B6L6 115 aa13.18□□□□□ -0.3
TNFRSF1A-213ENST00000540022 H3BNG1 76 aa13.18□□□□□ -0.3
TNFRSF1A-213ENST00000540022 PPP1R17O96001 155 aa13.18□□□□□ -0.3
TNFRSF1A-213ENST00000540022 RPL36AP83881 106 aaKnown RBP13.18□□□□□ -0.3
TNFRSF1A-213ENST00000540022 RPL36ALQ969Q0 106 aaKnown RBP13.18□□□□□ -0.3
TNFRSF1A-213ENST00000540022 DNAJC30Q96LL9 226 aa13.18□□□□□ -0.3
TNFRSF1A-213ENST00000540022 TNFRSF18Q9Y5U5 241 aa13.18□□□□□ -0.3
TNFRSF1A-213ENST00000540022 PLECQ15149 4684 aaKnown RBP13.17□□□□□ -0.3
TNFRSF1A-213ENST00000540022 LINC00694P0DN24 101 aa13.17□□□□□ -0.3
TNFRSF1A-213ENST00000540022 LAMTOR2Q9Y2Q5 125 aa13.17□□□□□ -0.3
TNFRSF1A-213ENST00000540022 IGLL5B9A064 214 aa13.16□□□□□ -0.3
TNFRSF1A-213ENST00000540022 SUMO2P61956 95 aaKnown RBP13.16□□□□□ -0.3
TNFRSF1A-213ENST00000540022 CEMP1Q6PRD7 247 aaPredicted RBP13.16□□□□□ -0.3
TNFRSF1A-213ENST00000540022 ST20Q9HBF5 79 aa13.16□□□□□ -0.3
TNFRSF1A-213ENST00000540022 A0A096LPF7 62 aa13.15□□□□□ -0.3
TNFRSF1A-213ENST00000540022 SDHAF1A6NFY7 115 aa13.15□□□□□ -0.3
TNFRSF1A-213ENST00000540022 UBE2D3P61077 147 aa13.15□□□□□ -0.3
TNFRSF1A-213ENST00000540022 UBE2D2P62837 147 aa13.15□□□□□ -0.3
TNFRSF1A-213ENST00000540022 TMEM70Q9BUB7 260 aa13.15□□□□□ -0.3
TNFRSF1A-213ENST00000540022 ICOSQ9Y6W8 199 aa13.15□□□□□ -0.3
TNFRSF1A-213ENST00000540022 POLR2KP53803 58 aaKnown RBP13.14□□□□□ -0.31
TNFRSF1A-213ENST00000540022 MRPL23Q16540 153 aaKnown RBP13.14□□□□□ -0.31
TNFRSF1A-213ENST00000540022 C20orf78Q9BR46 151 aa13.14□□□□□ -0.31
TNFRSF1A-213ENST00000540022 DNAH1Q9P2D7 4330 aa13.14□□□□□ -0.31
TNFRSF1A-213ENST00000540022 IGHV3-38A0A0C4DH36 116 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 NUPR2A6NF83 97 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 NUDT3O95989 172 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 IQCJQ1A5X6 159 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 NEGR1Q7Z3B1 354 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 LOC389332A0A1B0GUA5 103 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 PRSS47A8MTI9 375 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 C18orf32Q8TCD1 76 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 DEFB104AQ8WTQ1 72 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 MAP1LC3AQ9H492 121 aa13.13□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HYDINQ4G0P3 5121 aa13.12□□□□□ -0.31
TNFRSF1A-213ENST00000540022 ATP6V0E2Q8NHE4 81 aa13.12□□□□□ -0.31
TNFRSF1A-213ENST00000540022 SMIM2Q9BVW6 85 aa13.12□□□□□ -0.31
TNFRSF1A-213ENST00000540022 RPL32P62910 135 aaKnown RBP13.11□□□□□ -0.31
TNFRSF1A-213ENST00000540022 C15orf53Q8NAA6 179 aa13.11□□□□□ -0.31
TNFRSF1A-213ENST00000540022 IGLV2-18A0A075B6J9 118 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 TRBV27A0A0K0K1C4 114 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 C1orf196B1AJZ1 125 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BKO60814 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BJP06899 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BOP23527 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BBP33778 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BDP58876 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BCP62807 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST2H2BEQ16778 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 DAZ4Q86SG3 579 aaKnown RBP13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BHQ93079 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BNQ99877 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 HIST1H2BMQ99879 126 aa13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 DAZ3Q9NR90 486 aaKnown RBP13.1□□□□□ -0.31
TNFRSF1A-213ENST00000540022 VCYO14598 125 aa13.09□□□□□ -0.31
TNFRSF1A-213ENST00000540022 IFI27P40305 119 aaPredicted RBP13.09□□□□□ -0.31
TNFRSF1A-213ENST00000540022 KLK5Q9Y337 293 aaPredicted RBP13.09□□□□□ -0.31
TNFRSF1A-213ENST00000540022 LCE6AA0A183 80 aa13.08□□□□□ -0.31
TNFRSF1A-213ENST00000540022 I3L3M4 83 aa13.08□□□□□ -0.31
TNFRSF1A-213ENST00000540022 PMCHP20382 165 aa13.08□□□□□ -0.31
TNFRSF1A-213ENST00000540022 ALMS1Q8TCU4 4167 aa13.08□□□□□ -0.32
TNFRSF1A-213ENST00000540022 SH2D6Q7Z4S9 175 aa13.08□□□□□ -0.32
TNFRSF1A-213ENST00000540022 Q8N8P6 123 aa13.08□□□□□ -0.32
TNFRSF1A-213ENST00000540022 APLNQ9ULZ1 77 aa13.08□□□□□ -0.32
TNFRSF1A-213ENST00000540022 Q0VG73 95 aa13.07□□□□□ -0.32
TNFRSF1A-213ENST00000540022 NTM-AS1Q6ZSK4 140 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms