RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 LRRC37A5PQ49AS3 106 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 C1orf137Q5JT78 98 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 PQLC2Q6ZP29 291 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 ZFP82Q8N141 532 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 ARL6IP6Q8N6S5 226 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 EPDR1Q9UM22 224 aa4.71□□□□□ -1.66
USP54-213ENST00000481991 IGLV4-60A0A075B6I1 120 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 TRAV6A0A075B6T7 132 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 TRBV6-1A0A0K0K1D8 114 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 MUC21A0A140T8X8 626 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 KRBOX1C9JBD0 128 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 UBE2L6O14933 153 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 UBE2D1P51668 147 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 GAGE2BQ13066 116 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 C5orf17Q8NAS9 161 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 OR10G8Q8NGN5 311 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 SMIM3Q9BZL3 60 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 V9GYH0 126 aa4.7□□□□□ -1.66
USP54-213ENST00000481991 ARL14EPLP0DKL9 152 aa4.69□□□□□ -1.66
USP54-213ENST00000481991 C15orf56Q8N910 161 aa4.69□□□□□ -1.66
USP54-213ENST00000481991 FER1L6-AS1Q8NA97 138 aa4.69□□□□□ -1.66
USP54-213ENST00000481991 C20orf203Q8NBC4 194 aa4.69□□□□□ -1.66
USP54-213ENST00000481991 LINC00526Q96FQ7 95 aa4.69□□□□□ -1.66
USP54-213ENST00000481991 AQP10Q96PS8 301 aa4.69□□□□□ -1.66
USP54-213ENST00000481991 SDHCQ99643 169 aaPredicted RBP4.69□□□□□ -1.66
USP54-213ENST00000481991 FAT4Q6V0I7 4981 aa4.69□□□□□ -1.66
USP54-213ENST00000481991 TRAV1-1A0A0B4J248 108 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 SH2D1AO60880 128 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 SIX6O95475 246 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 SMIM17P0DL12 118 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 TMBIM6P55061 237 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 EIF5AP63241 154 aaKnown RBP4.68□□□□□ -1.66
USP54-213ENST00000481991 SUN5Q8TC36 379 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 DIRC1Q969H9 104 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 TMEM243Q9BU79 118 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 PKIGQ9Y2B9 76 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 ARL2-SNX15V9GYD0 113 aa4.68□□□□□ -1.66
USP54-213ENST00000481991 CCDC160A6NGH7 325 aa4.67□□□□□ -1.66
USP54-213ENST00000481991 CYCSP99999 105 aaKnown RBP4.67□□□□□ -1.66
USP54-213ENST00000481991 CNPY1Q3B7I2 92 aa4.67□□□□□ -1.66
USP54-213ENST00000481991 FAM162BQ5T6X4 162 aa4.67□□□□□ -1.66
USP54-213ENST00000481991 SPANXN1Q5VSR9 72 aa4.67□□□□□ -1.66
USP54-213ENST00000481991 ZNF471Q9BX82 626 aaPredicted RBP4.67□□□□□ -1.66
USP54-213ENST00000481991 A0A087WZ39 114 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 A6NJY4 79 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 MGPP08493 103 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 GCHFRP30047 84 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 RPL12P30050 165 aaKnown RBP4.66□□□□□ -1.66
USP54-213ENST00000481991 BTCP35070 178 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 CDC34P49427 236 aaPredicted RBP4.66□□□□□ -1.66
USP54-213ENST00000481991 CRIP1P50238 77 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 IL15RAQ13261 267 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 IQCJQ1A5X6 159 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 CARD19Q96LW7 228 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 KRTAP4-8Q9BYQ9 185 aa4.66□□□□□ -1.66
USP54-213ENST00000481991 A0A1B0GUV1 79 aa4.65□□□□□ -1.67
USP54-213ENST00000481991 A0A1W2PNN7 141 aa4.65□□□□□ -1.67
USP54-213ENST00000481991 H2AFB2P0C5Z0 115 aa4.65□□□□□ -1.67
USP54-213ENST00000481991 AMTP48728 403 aa4.65□□□□□ -1.67
USP54-213ENST00000481991 UBE2G2P60604 165 aa4.65□□□□□ -1.67
USP54-213ENST00000481991 DNLZQ5SXM8 178 aa4.65□□□□□ -1.67
USP54-213ENST00000481991 AMMECR1LQ6DCA0 310 aa4.65□□□□□ -1.67
USP54-213ENST00000481991 PRR27Q6MZM9 219 aa4.65□□□□□ -1.67
USP54-213ENST00000481991 PHF5AQ7RTV0 110 aaKnown RBP4.65□□□□□ -1.67
USP54-213ENST00000481991 CHCHD10Q8WYQ3 142 aaPredicted RBP4.65□□□□□ -1.67
USP54-213ENST00000481991 IGLV1-50A0A075B6I6 118 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 ZNF561-AS1K7EIQ3 104 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 IGLV7-43P04211 117 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 XCL1P47992 114 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 NKX2-5P52952 324 aaPredicted RBP4.64□□□□□ -1.67
USP54-213ENST00000481991 UBE2G1P62253 170 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 SYCNQ0VAF6 134 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 RNASEKQ6P5S7 137 aaKnown RBP4.64□□□□□ -1.67
USP54-213ENST00000481991 OR10AG1Q8NH19 301 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 RAB24Q969Q5 203 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 TMEM167BQ9NRX6 74 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 NUDT15Q9NV35 164 aa4.64□□□□□ -1.67
USP54-213ENST00000481991 FSIP2Q5CZC0 6907 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 LOC107984640A0A0U1RRK4 108 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 H0Y9J4 135 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 H0YIZ8 118 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 PEX7O00628 323 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 CXorf1O96002 111 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 PTTG1IPP53801 180 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 ZNF674Q2M3X9 581 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 C9orf116Q5BN46 136 aaPredicted RBP4.63□□□□□ -1.67
USP54-213ENST00000481991 CDIP1Q9H305 208 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 ZFP30Q9Y2G7 519 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 HSPB11Q9Y547 144 aa4.63□□□□□ -1.67
USP54-213ENST00000481991 GVQW2A0A096LPI5 108 aaPredicted RBP4.62□□□□□ -1.67
USP54-213ENST00000481991 LYRM1O43325 122 aa4.62□□□□□ -1.67
USP54-213ENST00000481991 STAG3L2P0CL84 134 aa4.62□□□□□ -1.67
USP54-213ENST00000481991 STAG3L3P0CL85 134 aa4.62□□□□□ -1.67
USP54-213ENST00000481991 BCL2P10415 239 aa4.62□□□□□ -1.67
USP54-213ENST00000481991 IL7P13232 177 aa4.62□□□□□ -1.67
USP54-213ENST00000481991 RPL13AP40429 203 aaKnown RBP4.62□□□□□ -1.67
USP54-213ENST00000481991 LINC01547P58512 204 aaPredicted RBP4.62□□□□□ -1.67
USP54-213ENST00000481991 RPL18AQ02543 176 aaKnown RBP4.62□□□□□ -1.67
USP54-213ENST00000481991 COTL1Q14019 142 aa4.62□□□□□ -1.67
USP54-213ENST00000481991 Q86TA4 180 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms