RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 WFDC11Q8NEX6 87 aa8.09□□□□□ -1.12
CLIP1-213ENST00000540338 RASL10AQ92737 203 aa8.09□□□□□ -1.12
CLIP1-213ENST00000540338 KLLNB2CW77 178 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 SMAGPQ0VAQ4 97 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 PMVKQ15126 192 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 SPAG8Q99932 426 aaPredicted RBP8.08□□□□□ -1.12
CLIP1-213ENST00000540338 MDFICQ9P1T7 246 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 EDN2P20800 178 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 CFHR3Q02985 330 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 Q6ZVH6 145 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 BOD1L2Q8IYS8 172 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 TMEM61Q8N0U2 210 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 DEFB125Q8N687 156 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 NRACQ8N912 160 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 JPT2Q9H910 190 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 PRSS29PA6NIE9 313 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 I3L3M4 83 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 CCL24O00175 119 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 EMP1P54849 157 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 LYRM7Q5U5X0 104 aa8.08□□□□□ -1.12
CLIP1-213ENST00000540338 SCGB1C2P0DMR2 95 aa8.07□□□□□ -1.12
CLIP1-213ENST00000540338 SPCS1Q9Y6A9 102 aa8.07□□□□□ -1.12
CLIP1-213ENST00000540338 RHODO00212 210 aa8.07□□□□□ -1.12
CLIP1-213ENST00000540338 CD28P10747 220 aa8.07□□□□□ -1.12
CLIP1-213ENST00000540338 RNASE3P12724 160 aaKnown RBP8.07□□□□□ -1.12
CLIP1-213ENST00000540338 TOMM6Q96B49 74 aa8.07□□□□□ -1.12
CLIP1-213ENST00000540338 GEMIN7Q9H840 131 aaKnown RBP8.07□□□□□ -1.12
CLIP1-213ENST00000540338 EPG5Q9HCE0 2579 aa8.07□□□□□ -1.12
CLIP1-213ENST00000540338 COTL1Q14019 142 aa8.07□□□□□ -1.12
CLIP1-213ENST00000540338 DLX4Q92988 240 aaPredicted RBP8.07□□□□□ -1.12
CLIP1-213ENST00000540338 TP73-AS1Q9UF72 201 aa8.07□□□□□ -1.12
CLIP1-213ENST00000540338 APRG1Q8IVJ8 170 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 IGHV3-16A0A0C4DH30 117 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 K7ERU9 68 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 M0R2P5 195 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 Q1RN00 199 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 NAA38Q9BRA0 125 aaKnown RBP8.06□□□□□ -1.12
CLIP1-213ENST00000540338 ATMQ13315 3056 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 ANKRD17O75179 2603 aaKnown RBP8.06□□□□□ -1.12
CLIP1-213ENST00000540338 A0A096LNJ9 63 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 TRGV1A0A0A0MS02 117 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 TRAV12-1A0A0B4J245 112 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 H3BRM9 83 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 RPL24P83731 157 aaKnown RBP8.06□□□□□ -1.12
CLIP1-213ENST00000540338 ZFP2Q6ZN57 461 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 WNK1Q9H4A3 2382 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 DNAJC9-AS1A6NH13 148 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 J3QR89 54 aa8.06□□□□□ -1.12
CLIP1-213ENST00000540338 TSSC4Q9Y5U2 329 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-213ENST00000540338 SPXQ9BT56 116 aa8.05□□□□□ -1.12
CLIP1-213ENST00000540338 ABCA12Q86UK0 2595 aa8.05□□□□□ -1.12
CLIP1-213ENST00000540338 TRGV2A0A075B6R0 118 aa8.05□□□□□ -1.12
CLIP1-213ENST00000540338 RHOHQ15669 191 aa8.05□□□□□ -1.12
CLIP1-213ENST00000540338 SAMD5Q5TGI4 173 aa8.05□□□□□ -1.12
CLIP1-213ENST00000540338 PRADC1Q9BSG0 188 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 MYMXA0A1B0GTQ4 84 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 Q6ZSV7 163 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 TRBV25-1A0A075B6N4 114 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 UBE2L6O14933 153 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 LOC107984156A0A0G2JMH3 177 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 PRSS2P07478 247 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 ARL17AQ8IVW1 177 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 RNF152Q8N8N0 203 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 TTTY13Q9BZ97 58 aa8.04□□□□□ -1.12
CLIP1-213ENST00000540338 C9orf118A6NHY6 69 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 H3BMM0 161 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 HIVEP2P31629 2446 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 TRAV25A0A0B4J276 109 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 RPL35AP18077 110 aaKnown RBP8.03□□□□□ -1.12
CLIP1-213ENST00000540338 PSMB2P49721 201 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 C18orf65Q6ZTR6 163 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 BAALCQ8WXS3 180 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 MRPL16Q9NX20 251 aaKnown RBP8.03□□□□□ -1.12
CLIP1-213ENST00000540338 HIST2H2BCQ6DN03 193 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 C1QTNF4Q9BXJ3 329 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 CFAP47Q6ZTR5 3102 aa8.03□□□□□ -1.12
CLIP1-213ENST00000540338 APOMO95445 188 aa8.02□□□□□ -1.12
CLIP1-213ENST00000540338 MAP6D1Q9H9H5 199 aa8.02□□□□□ -1.12
CLIP1-213ENST00000540338 TAX1BP3O14907 124 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 RPL36AP83881 106 aaKnown RBP8.02□□□□□ -1.13
CLIP1-213ENST00000540338 DEFB114Q30KQ6 69 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 OR5A1Q8NGJ0 315 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 PHLDA1Q8WV24 401 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-213ENST00000540338 RPL36ALQ969Q0 106 aaKnown RBP8.02□□□□□ -1.13
CLIP1-213ENST00000540338 HIGD1BQ9P298 99 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 TRAV2A0A0B4J234 112 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 TAL2Q16559 108 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 ZNF479Q96JC4 524 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 IGHV3-64A0A075B6Q5 118 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 IGHV3-53P01767 116 aa8.02□□□□□ -1.13
CLIP1-213ENST00000540338 RPL39P62891 51 aaKnown RBP8.02□□□□□ -1.13
CLIP1-213ENST00000540338 PRSS47A8MTI9 375 aa8.01□□□□□ -1.13
CLIP1-213ENST00000540338 CEND1Q8N111 149 aa8.01□□□□□ -1.13
CLIP1-213ENST00000540338 PLEKHB2Q96CS7 222 aa8.01□□□□□ -1.13
CLIP1-213ENST00000540338 CITED2Q99967 270 aaPredicted RBP8.01□□□□□ -1.13
CLIP1-213ENST00000540338 AZU1P20160 251 aa8.01□□□□□ -1.13
CLIP1-213ENST00000540338 TIMM17AQ99595 171 aa8.01□□□□□ -1.13
CLIP1-213ENST00000540338 IGLV2-18A0A075B6J9 118 aa8□□□□□ -1.13
CLIP1-213ENST00000540338 CCL25O15444 150 aa8□□□□□ -1.13
CLIP1-213ENST00000540338 C9orf85Q96MD7 179 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms