RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 TAX1BP3O14907 124 aa8.38□□□□□ -1.07
CCDC40-204ENST00000397545 PFN2P35080 140 aa8.38□□□□□ -1.07
CCDC40-204ENST00000397545 S100A7L2Q5SY68 101 aa8.38□□□□□ -1.07
CCDC40-204ENST00000397545 NDUFA4O00483 81 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 INSP01308 110 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 GDF5OSQ5U4N7 250 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 SP5Q6BEB4 398 aaPredicted RBP8.37□□□□□ -1.07
CCDC40-204ENST00000397545 ZNRF2Q8NHG8 242 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 CDKN1BP46527 198 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 GAGE2AQ6NT46 116 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 PPDPFLQ8WWR9 84 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 OR11H6Q8NGC7 330 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 I3L3M4 83 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 J3QKU1 62 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 WFDC2Q14508 124 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 SCRT2Q9NQ03 307 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 KLF12Q9Y4X4 402 aa8.37□□□□□ -1.07
CCDC40-204ENST00000397545 C2orf70A6NJV1 201 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 IGLV2-23P01705 113 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 IGLV2-8P01709 118 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 BLCAPP62952 87 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 SPAG8Q99932 426 aaPredicted RBP8.36□□□□□ -1.07
CCDC40-204ENST00000397545 TRBV20-1A0A075B6N2 111 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 IGLV11-55A0A075B6I3 123 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 IGKV1D-37A0A075B6S9 117 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 TEX22C9J3V5 150 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 SLC25A20O43772 301 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 NRGNQ92686 78 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 ZNF48Q96MX3 618 aaPredicted RBP8.36□□□□□ -1.07
CCDC40-204ENST00000397545 YPEL4Q96NS1 127 aa8.36□□□□□ -1.07
CCDC40-204ENST00000397545 IGLV1-47P01700 117 aa8.35□□□□□ -1.07
CCDC40-204ENST00000397545 TMEM141Q96I45 108 aa8.35□□□□□ -1.07
CCDC40-204ENST00000397545 BUB3O43684 328 aa8.35□□□□□ -1.07
CCDC40-204ENST00000397545 NTN5Q8WTR8 489 aaPredicted RBP8.35□□□□□ -1.07
CCDC40-204ENST00000397545 LEPROTO15243 131 aa8.35□□□□□ -1.07
CCDC40-204ENST00000397545 SIVA1O15304 175 aa8.35□□□□□ -1.07
CCDC40-204ENST00000397545 C8orf31Q8N9H6 132 aa8.35□□□□□ -1.07
CCDC40-204ENST00000397545 SPENQ96T58 3664 aaKnown RBP8.35□□□□□ -1.07
CCDC40-204ENST00000397545 IGHV7-4-1A0A0J9YVY3 117 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 CENPVL3A0A0U1RRI6 287 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 RS1O15537 224 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 C20orf78Q9BR46 151 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 LAMTOR3Q9UHA4 124 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 TP53TG3Q9ULZ0 132 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 DMXL2Q8TDJ6 3036 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 DCHS1Q96JQ0 3298 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 H3BMM0 161 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 NXPH4O95158 308 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 CGB3P0DN86 165 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 CGB7P0DN87 165 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 UBE2WQ96B02 151 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 EDA2RQ9HAV5 297 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 IGLL5B9A064 214 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 GAGE7O76087 117 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 GAGE12FP0CL80 117 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 GAGE12GP0CL81 117 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 GAGE12IP0CL82 117 aa8.34□□□□□ -1.07
CCDC40-204ENST00000397545 HOXB4P17483 251 aaPredicted RBP8.34□□□□□ -1.07
CCDC40-204ENST00000397545 DEFB136Q30KP8 78 aa8.33□□□□□ -1.08
CCDC40-204ENST00000397545 RPL39P62891 51 aaKnown RBP8.33□□□□□ -1.08
CCDC40-204ENST00000397545 LINC01356Q8N9X3 169 aa8.33□□□□□ -1.08
CCDC40-204ENST00000397545 IGHV4-59P01825 116 aa8.33□□□□□ -1.08
CCDC40-204ENST00000397545 HIST2H2BCQ6DN03 193 aa8.33□□□□□ -1.08
CCDC40-204ENST00000397545 ATMQ13315 3056 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 A0A0J9YXV3 536 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 C19orf71A6NCJ1 209 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 DSCR9P59020 149 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 ADGRG4Q8IZF6 3080 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 DSCAMO60469 2012 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 LGALS1P09382 135 aaKnown RBP8.32□□□□□ -1.08
CCDC40-204ENST00000397545 GAGE6Q13070 117 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 TAL2Q16559 108 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 CR1LQ2VPA4 569 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 Q8N9W7 124 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.32□□□□□ -1.08
CCDC40-204ENST00000397545 IGKV2-29A2NJV5 120 aaPredicted RBP8.32□□□□□ -1.08
CCDC40-204ENST00000397545 RHODO00212 210 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 EIF4EBP1Q13541 118 aaPredicted RBP8.32□□□□□ -1.08
CCDC40-204ENST00000397545 Q8N7P7 452 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 ZNF493Q6ZR52 646 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 RNF114Q9Y508 228 aa8.32□□□□□ -1.08
CCDC40-204ENST00000397545 ZNF80P51504 273 aaPredicted RBP8.31□□□□□ -1.08
CCDC40-204ENST00000397545 FANCD2OSQ96PS1 177 aa8.31□□□□□ -1.08
CCDC40-204ENST00000397545 IGHV4-61A0A0C4DH41 118 aa8.31□□□□□ -1.08
CCDC40-204ENST00000397545 AJUBAQ96IF1 538 aa8.31□□□□□ -1.08
CCDC40-204ENST00000397545 A0A096LPF7 62 aa8.31□□□□□ -1.08
CCDC40-204ENST00000397545 IGHV4-38-2P0DP08 117 aa8.31□□□□□ -1.08
CCDC40-204ENST00000397545 SPATA12Q7Z6I5 190 aa8.31□□□□□ -1.08
CCDC40-204ENST00000397545 CRYGCP07315 174 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 CFC1BP0CG36 223 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 CFC1P0CG37 223 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 BOD1L2Q8IYS8 172 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 CARD19Q96LW7 228 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 A0A1B0GXF2 115 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 ZFP36P26651 326 aaKnown RBP8.3□□□□□ -1.08
CCDC40-204ENST00000397545 ATP6V0BQ99437 205 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 IGF2-ASQ6U949 168 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 FOXI2Q6ZQN5 318 aa8.3□□□□□ -1.08
CCDC40-204ENST00000397545 MAP1AP78559 2803 aaPredicted RBP8.29□□□□□ -1.08
CCDC40-204ENST00000397545 A4D1N5 150 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms