RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MDFICQ9P1T7 246 aa9.94□□□□□ -0.82
CCDC3-202ENST00000378839 LGALS1P09382 135 aaKnown RBP9.94□□□□□ -0.82
CCDC3-202ENST00000378839 SORL1Q92673 2214 aa9.94□□□□□ -0.82
CCDC3-202ENST00000378839 TMEM89A2RUT3 159 aa9.93□□□□□ -0.82
CCDC3-202ENST00000378839 TMEM160Q9NX00 188 aa9.93□□□□□ -0.82
CCDC3-202ENST00000378839 A0A087WWL8 130 aa9.93□□□□□ -0.82
CCDC3-202ENST00000378839 ID1P41134 155 aa9.93□□□□□ -0.82
CCDC3-202ENST00000378839 DEFB113Q30KQ7 82 aa9.93□□□□□ -0.82
CCDC3-202ENST00000378839 ZC2HC1BQ5TFG8 222 aa9.93□□□□□ -0.82
CCDC3-202ENST00000378839 MAPKAPK5-AS1Q8N8E1 139 aa9.93□□□□□ -0.82
CCDC3-202ENST00000378839 TENM4Q6N022 2769 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 C9orf118A6NHY6 69 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 CD7P09564 240 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 DUX3Q96PT4 197 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 A0A087WX48 190 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 A6NDN8 102 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 DPM2O94777 84 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 SLURP1P55000 103 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 FAM159AQ6UWV7 190 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 TOMM6Q96B49 74 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 Q96MF0 132 aa9.92□□□□□ -0.82
CCDC3-202ENST00000378839 CHTOPQ9Y3Y2 248 aaKnown RBP9.92□□□□□ -0.82
CCDC3-202ENST00000378839 K7EP34 96 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 ATP5LO75964 103 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 SPINK13Q1W4C9 94 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 ETDBQ3ZM63 59 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 TCTEX1D4Q5JR98 221 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 C20orf78Q9BR46 151 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 NHP2Q9NX24 153 aaKnown RBP9.91□□□□□ -0.82
CCDC3-202ENST00000378839 IGHV3-16A0A0C4DH30 117 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 RBMY1A1P0DJD3 496 aaKnown RBP9.91□□□□□ -0.82
CCDC3-202ENST00000378839 RBMY1CP0DJD4 496 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 FABP2P12104 132 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 RBMY1FQ15415 496 aaKnown RBP9.91□□□□□ -0.82
CCDC3-202ENST00000378839 RNF152Q8N8N0 203 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 PRRC2AP48634 2157 aaKnown RBP9.91□□□□□ -0.82
CCDC3-202ENST00000378839 WFDC2Q14508 124 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 SUMO4Q6EEV6 95 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 Q8N1Y9 231 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 UBE2E2Q96LR5 201 aa9.91□□□□□ -0.82
CCDC3-202ENST00000378839 LGALS9O00182 355 aa9.9□□□□□ -0.82
CCDC3-202ENST00000378839 ELANEP08246 267 aa9.9□□□□□ -0.82
CCDC3-202ENST00000378839 HIST2H2BCQ6DN03 193 aa9.9□□□□□ -0.82
CCDC3-202ENST00000378839 SIVA1O15304 175 aa9.9□□□□□ -0.82
CCDC3-202ENST00000378839 PRM2P04554 102 aa9.9□□□□□ -0.82
CCDC3-202ENST00000378839 SAMD5Q5TGI4 173 aa9.9□□□□□ -0.82
CCDC3-202ENST00000378839 OR9G4Q8NGQ1 327 aa9.9□□□□□ -0.82
CCDC3-202ENST00000378839 C9orf85Q96MD7 179 aa9.9□□□□□ -0.82
CCDC3-202ENST00000378839 TSHBP01222 138 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 INSL3P51460 131 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 MORN3Q6PF18 240 aaPredicted RBP9.89□□□□□ -0.83
CCDC3-202ENST00000378839 NEXN-AS1Q8NBZ9 246 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 FXYD2P54710 66 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 TRAV26-1A0A087WT03 109 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 UFSP1Q6NVU6 142 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 C2orf66Q6UXQ4 117 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 SCGB3A1Q96QR1 104 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 SIGMAR1Q99720 223 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 ITPR3Q14573 2671 aa9.89□□□□□ -0.83
CCDC3-202ENST00000378839 A0A1W2PPM0 123 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 SNRPD3P62318 126 aaKnown RBP9.88□□□□□ -0.83
CCDC3-202ENST00000378839 HSD52Q0P140 79 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 BAALCQ8WXS3 180 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 NF1P21359 2839 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 TLN2Q9Y4G6 2542 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 TRBV25-1A0A075B6N4 114 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 KNCNA6PVL3 124 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 H3BMG7 143 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 ORMDL2Q53FV1 153 aa9.88□□□□□ -0.83
CCDC3-202ENST00000378839 DUSP14O95147 198 aaKnown RBP9.87□□□□□ -0.83
CCDC3-202ENST00000378839 CRYGDP07320 174 aa9.87□□□□□ -0.83
CCDC3-202ENST00000378839 POLR2KP53803 58 aaKnown RBP9.87□□□□□ -0.83
CCDC3-202ENST00000378839 SEC11AP67812 179 aa9.87□□□□□ -0.83
CCDC3-202ENST00000378839 Q8N2B8 174 aa9.87□□□□□ -0.83
CCDC3-202ENST00000378839 ODF3Q96PU9 254 aa9.87□□□□□ -0.83
CCDC3-202ENST00000378839 CREBBPQ92793 2442 aa9.87□□□□□ -0.83
CCDC3-202ENST00000378839 TRAV12-1A0A0B4J245 112 aa9.87□□□□□ -0.83
CCDC3-202ENST00000378839 RBMY1BA6NDE4 496 aaKnown RBP9.87□□□□□ -0.83
CCDC3-202ENST00000378839 RBMY1EA6NEQ0 496 aaKnown RBP9.87□□□□□ -0.83
CCDC3-202ENST00000378839 RBMY1DP0C7P1 496 aaKnown RBP9.87□□□□□ -0.83
CCDC3-202ENST00000378839 CKS1BP61024 79 aa9.86□□□□□ -0.83
CCDC3-202ENST00000378839 RPL39P62891 51 aaKnown RBP9.86□□□□□ -0.83
CCDC3-202ENST00000378839 FAM74A4Q5TZK3 123 aa9.86□□□□□ -0.83
CCDC3-202ENST00000378839 H3BRM9 83 aa9.86□□□□□ -0.83
CCDC3-202ENST00000378839 PRSS29PA6NIE9 313 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 F8VRH5 84 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 H7C1H1 209 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 CHAC1Q9BUX1 264 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 ANK3Q12955 4377 aaKnown RBP9.85□□□□□ -0.83
CCDC3-202ENST00000378839 IGHV1OR15-1A0A075B7D0 117 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 WFDC11Q8NEX6 87 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 GAGE12HA6NDE8 117 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 ZFP2Q6ZN57 461 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 OR11H1Q8NG94 326 aa9.85□□□□□ -0.83
CCDC3-202ENST00000378839 MYO9AB2RTY4 2548 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 SONP18583 2426 aaKnown RBP9.84□□□□□ -0.83
CCDC3-202ENST00000378839 F5H697 171 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 HLA-DRB4P13762 266 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 LRRC75A-AS1Q8N1F1 130 aa9.84□□□□□ -0.83
CCDC3-202ENST00000378839 HIGD1BQ9P298 99 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms