RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SMIM12Q96EX1 92 aa9.51□□□□□ -0.89
SHMT2-228ENST00000557302 EIF5A2Q9GZV4 153 aaKnown RBP9.51□□□□□ -0.89
SHMT2-228ENST00000557302 IL36BQ9NZH7 164 aa9.51□□□□□ -0.89
SHMT2-228ENST00000557302 TRGV4A0A0C4DH28 118 aa9.5□□□□□ -0.89
SHMT2-228ENST00000557302 H3BNG1 76 aa9.5□□□□□ -0.89
SHMT2-228ENST00000557302 H3BVH4 76 aa9.5□□□□□ -0.89
SHMT2-228ENST00000557302 SFTA3P0C7M3 94 aa9.5□□□□□ -0.89
SHMT2-228ENST00000557302 MGST1P10620 155 aaKnown RBP9.5□□□□□ -0.89
SHMT2-228ENST00000557302 SLAQ13239 276 aa9.5□□□□□ -0.89
SHMT2-228ENST00000557302 DNLZQ5SXM8 178 aa9.5□□□□□ -0.89
SHMT2-228ENST00000557302 ZNF479Q96JC4 524 aa9.5□□□□□ -0.89
SHMT2-228ENST00000557302 FAM210AQ96ND0 272 aa9.5□□□□□ -0.89
SHMT2-228ENST00000557302 TRBV20OR9-2A0A075B6H5 130 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 IGLV2-8P01709 118 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 ARMS2P0C7Q2 107 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 FHL2Q14192 279 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 UBE2DNLQ8IWF7 75 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 POM121L12Q8N7R1 296 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 PCNPQ8WW12 178 aaKnown RBP9.49□□□□□ -0.89
SHMT2-228ENST00000557302 DAZAP1Q96EP5 407 aaKnown RBP9.49□□□□□ -0.89
SHMT2-228ENST00000557302 VSIG2Q96IQ7 327 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 BIN3Q9NQY0 253 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 PRO0255Q9UI72 69 aa9.49□□□□□ -0.89
SHMT2-228ENST00000557302 BIRC6Q9NR09 4857 aa9.48□□□□□ -0.89
SHMT2-228ENST00000557302 PGPEP1LA6NFU8 196 aa9.48□□□□□ -0.89
SHMT2-228ENST00000557302 PAX4O43316 350 aa9.48□□□□□ -0.89
SHMT2-228ENST00000557302 CXCL1P09341 107 aa9.48□□□□□ -0.89
SHMT2-228ENST00000557302 CEBPGP53567 150 aa9.48□□□□□ -0.89
SHMT2-228ENST00000557302 RPL19P84098 196 aaKnown RBP9.48□□□□□ -0.89
SHMT2-228ENST00000557302 PIK3CD-AS1Q5SR53 167 aa9.48□□□□□ -0.89
SHMT2-228ENST00000557302 PARLQ9H300 379 aa9.48□□□□□ -0.89
SHMT2-228ENST00000557302 HHLA3Q9XRX5 114 aa9.48□□□□□ -0.89
SHMT2-228ENST00000557302 RS1O15537 224 aa9.47□□□□□ -0.89
SHMT2-228ENST00000557302 NDUFS6O75380 124 aaKnown RBP9.47□□□□□ -0.89
SHMT2-228ENST00000557302 CRYBA4P53673 196 aa9.47□□□□□ -0.89
SHMT2-228ENST00000557302 RNF212Q495C1 297 aa9.47□□□□□ -0.89
SHMT2-228ENST00000557302 CFAP126Q5VTH2 177 aa9.47□□□□□ -0.89
SHMT2-228ENST00000557302 ZNF575Q86XF7 245 aa9.47□□□□□ -0.89
SHMT2-228ENST00000557302 SYT8Q8NBV8 401 aa9.47□□□□□ -0.89
SHMT2-228ENST00000557302 SCRT2Q9NQ03 307 aa9.47□□□□□ -0.89
SHMT2-228ENST00000557302 PHLDA3Q9Y5J5 127 aa9.47□□□□□ -0.89
SHMT2-228ENST00000557302 CIDEAO60543 219 aa9.46□□□□□ -0.9
SHMT2-228ENST00000557302 MED14OSP0DP75 135 aa9.46□□□□□ -0.9
SHMT2-228ENST00000557302 CCL18P55774 89 aa9.46□□□□□ -0.9
SHMT2-228ENST00000557302 A0A096LPF7 62 aa9.45□□□□□ -0.9
SHMT2-228ENST00000557302 C19orf71A6NCJ1 209 aa9.45□□□□□ -0.9
SHMT2-228ENST00000557302 A8MWV9 139 aa9.45□□□□□ -0.9
SHMT2-228ENST00000557302 P01737 135 aa9.45□□□□□ -0.9
SHMT2-228ENST00000557302 ZFP82Q8N141 532 aa9.45□□□□□ -0.9
SHMT2-228ENST00000557302 OR2D3Q8NGH3 330 aa9.45□□□□□ -0.9
SHMT2-228ENST00000557302 OCC1Q8TAD7 63 aa9.45□□□□□ -0.9
SHMT2-228ENST00000557302 ICOSQ9Y6W8 199 aa9.45□□□□□ -0.9
SHMT2-228ENST00000557302 IGHV3-73A0A0B4J1V6 119 aa9.44□□□□□ -0.9
SHMT2-228ENST00000557302 M0R381 172 aa9.44□□□□□ -0.9
SHMT2-228ENST00000557302 SRP19P09132 144 aaKnown RBP9.44□□□□□ -0.9
SHMT2-228ENST00000557302 GATA1P15976 413 aaPredicted RBP9.44□□□□□ -0.9
SHMT2-228ENST00000557302 FAM3BP58499 235 aaPredicted RBP9.44□□□□□ -0.9
SHMT2-228ENST00000557302 RPS20P60866 119 aaKnown RBP9.44□□□□□ -0.9
SHMT2-228ENST00000557302 SMIM7Q9BQ49 75 aa9.44□□□□□ -0.9
SHMT2-228ENST00000557302 KMT2AQ03164 3969 aa9.43□□□□□ -0.9
SHMT2-228ENST00000557302 XKRY2A2RUG3 117 aa9.43□□□□□ -0.9
SHMT2-228ENST00000557302 K7EN84 100 aa9.43□□□□□ -0.9
SHMT2-228ENST00000557302 SNAI2O43623 268 aa9.43□□□□□ -0.9
SHMT2-228ENST00000557302 GYPEP15421 78 aa9.43□□□□□ -0.9
SHMT2-228ENST00000557302 RAB14P61106 215 aa9.43□□□□□ -0.9
SHMT2-228ENST00000557302 MRPL23Q16540 153 aaKnown RBP9.43□□□□□ -0.9
SHMT2-228ENST00000557302 ZFP2Q6ZN57 461 aa9.43□□□□□ -0.9
SHMT2-228ENST00000557302 SSBP4Q9BWG4 385 aaPredicted RBP9.43□□□□□ -0.9
SHMT2-228ENST00000557302 ZNF727A8MUV8 499 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 RHODO00212 210 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 OR5AL1P0C617 328 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 SRIP30626 198 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 IFITM2Q01629 132 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 PEA15Q15121 130 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 NUDT10Q8NFP7 164 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 OR10AG1Q8NH19 301 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 NUDT11Q96G61 164 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 SFRP2Q96HF1 295 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 JPT2Q9H910 190 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 LINC00588Q9Y4M8 146 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 LY96Q9Y6Y9 160 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 DNAH6Q9C0G6 4158 aa9.42□□□□□ -0.9
SHMT2-228ENST00000557302 TRBV6-4A0A1B0GX49 114 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 K7EQD1 137 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 NXPH4O95158 308 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 GZMBP10144 247 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 RHOHQ15669 191 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 ESRGQ1W209 222 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 FAM74A4Q5TZK3 123 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 SPANXN1Q5VSR9 72 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 SLC25A29Q8N8R3 303 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 FER1L6-AS1Q8NA97 138 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 PRADC1Q9BSG0 188 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 SAMD10Q9BYL1 202 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 RNASE7Q9H1E1 156 aaKnown RBP9.41□□□□□ -0.9
SHMT2-228ENST00000557302 SMDT1Q9H4I9 107 aa9.41□□□□□ -0.9
SHMT2-228ENST00000557302 RPP21Q9H633 154 aaKnown RBP9.41□□□□□ -0.9
SHMT2-228ENST00000557302 NACAE9PAV3 2078 aa9.4□□□□□ -0.9
SHMT2-228ENST00000557302 MUC21A0A0G2JKD1 596 aa9.4□□□□□ -0.9
SHMT2-228ENST00000557302 MUC21A0A140T8X8 626 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms