RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FAM231AP0DMU4 169 aa9.85□□□□□ -0.83
PTCH1-226ENST00000553011 FAM231CP0DMU5 169 aa9.85□□□□□ -0.83
PTCH1-226ENST00000553011 MGST1P10620 155 aaKnown RBP9.85□□□□□ -0.83
PTCH1-226ENST00000553011 FHL2Q14192 279 aa9.85□□□□□ -0.83
PTCH1-226ENST00000553011 ZNF876PQ49A33 203 aa9.85□□□□□ -0.83
PTCH1-226ENST00000553011 DNLZQ5SXM8 178 aa9.85□□□□□ -0.83
PTCH1-226ENST00000553011 FAM210AQ96ND0 272 aa9.85□□□□□ -0.83
PTCH1-226ENST00000553011 TRGV4A0A0C4DH28 118 aa9.84□□□□□ -0.83
PTCH1-226ENST00000553011 ARMS2P0C7Q2 107 aa9.84□□□□□ -0.83
PTCH1-226ENST00000553011 OR4C5Q8NGB2 326 aa9.84□□□□□ -0.83
PTCH1-226ENST00000553011 EIF5A2Q9GZV4 153 aaKnown RBP9.84□□□□□ -0.83
PTCH1-226ENST00000553011 IL36BQ9NZH7 164 aa9.84□□□□□ -0.83
PTCH1-226ENST00000553011 TMEM250H0YL14 139 aa9.83□□□□□ -0.84
PTCH1-226ENST00000553011 UBE2DNLQ8IWF7 75 aa9.83□□□□□ -0.84
PTCH1-226ENST00000553011 PTH2Q96A98 100 aa9.83□□□□□ -0.84
PTCH1-226ENST00000553011 PARLQ9H300 379 aa9.83□□□□□ -0.84
PTCH1-226ENST00000553011 H3BNG1 76 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 RS1O15537 224 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 PAX4O43316 350 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 CEBPGP53567 150 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 CRYBA4P53673 196 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 CFAP126Q5VTH2 177 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 SMIM12Q96EX1 92 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 PRO0255Q9UI72 69 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 HHLA3Q9XRX5 114 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 KMT2AQ03164 3969 aa9.82□□□□□ -0.84
PTCH1-226ENST00000553011 C19orf71A6NCJ1 209 aa9.81□□□□□ -0.84
PTCH1-226ENST00000553011 SRP19P09132 144 aaKnown RBP9.81□□□□□ -0.84
PTCH1-226ENST00000553011 DMRTA1Q5VZB9 504 aa9.81□□□□□ -0.84
PTCH1-226ENST00000553011 JPT2Q9H910 190 aa9.81□□□□□ -0.84
PTCH1-226ENST00000553011 SCRT2Q9NQ03 307 aa9.81□□□□□ -0.84
PTCH1-226ENST00000553011 A0A096LPF7 62 aa9.8□□□□□ -0.84
PTCH1-226ENST00000553011 IGHV3-73A0A0B4J1V6 119 aa9.8□□□□□ -0.84
PTCH1-226ENST00000553011 K7EN84 100 aa9.8□□□□□ -0.84
PTCH1-226ENST00000553011 CXCL1P09341 107 aa9.8□□□□□ -0.84
PTCH1-226ENST00000553011 SLAQ13239 276 aa9.8□□□□□ -0.84
PTCH1-226ENST00000553011 RNF212Q495C1 297 aa9.8□□□□□ -0.84
PTCH1-226ENST00000553011 OCC1Q8TAD7 63 aa9.8□□□□□ -0.84
PTCH1-226ENST00000553011 DAZAP1Q96EP5 407 aaKnown RBP9.8□□□□□ -0.84
PTCH1-226ENST00000553011 PHLDA3Q9Y5J5 127 aa9.8□□□□□ -0.84
PTCH1-226ENST00000553011 M0R381 172 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 NDUFS6O75380 124 aaKnown RBP9.79□□□□□ -0.84
PTCH1-226ENST00000553011 MED14OSP0DP75 135 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 GZMBP10144 247 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 GATA1P15976 413 aaPredicted RBP9.79□□□□□ -0.84
PTCH1-226ENST00000553011 PIK3CD-AS1Q5SR53 167 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 SYT8Q8NBV8 401 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 OR2D3Q8NGH3 330 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 BIN3Q9NQY0 253 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 LINC00588Q9Y4M8 146 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 ICOSQ9Y6W8 199 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 DNAH6Q9C0G6 4158 aa9.79□□□□□ -0.84
PTCH1-226ENST00000553011 MUC21A0A0G2JKD1 596 aa9.78□□□□□ -0.84
PTCH1-226ENST00000553011 MUC21A0A140T8X8 626 aa9.78□□□□□ -0.84
PTCH1-226ENST00000553011 A8MWV9 139 aa9.78□□□□□ -0.84
PTCH1-226ENST00000553011 C9JQL5 133 aa9.78□□□□□ -0.84
PTCH1-226ENST00000553011 P01737 135 aa9.78□□□□□ -0.84
PTCH1-226ENST00000553011 SRSF3P84103 164 aaKnown RBP9.78□□□□□ -0.84
PTCH1-226ENST00000553011 OR10AG1Q8NH19 301 aa9.78□□□□□ -0.84
PTCH1-226ENST00000553011 SAMD10Q9BYL1 202 aa9.78□□□□□ -0.84
PTCH1-226ENST00000553011 LOC100131303A0A0U1RQF7 123 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 SNAI2O43623 268 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 GYPEP15421 78 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 CCL18P55774 89 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 ESRGQ1W209 222 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 ZFP82Q8N141 532 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 NUDT10Q8NFP7 164 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 NUDT11Q96G61 164 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 SMIM7Q9BQ49 75 aa9.77□□□□□ -0.85
PTCH1-226ENST00000553011 SSBP4Q9BWG4 385 aaPredicted RBP9.77□□□□□ -0.85
PTCH1-226ENST00000553011 RNASE7Q9H1E1 156 aaKnown RBP9.77□□□□□ -0.85
PTCH1-226ENST00000553011 IGLV2-18A0A075B6J9 118 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 ZNF727A8MUV8 499 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 K7EQD1 137 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 CIDEAO60543 219 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 NXPH4O95158 308 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 OR5AL1P0C617 328 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 RPS20P60866 119 aaKnown RBP9.76□□□□□ -0.85
PTCH1-226ENST00000553011 MRPL23Q16540 153 aaKnown RBP9.76□□□□□ -0.85
PTCH1-226ENST00000553011 UFSP1Q6NVU6 142 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 Q6ZSN1 163 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 SLC25A29Q8N8R3 303 aa9.76□□□□□ -0.85
PTCH1-226ENST00000553011 A0A087WWL8 130 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 IGLC6P0CF74 106 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 SSTP61278 116 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 IFITM2Q01629 132 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 PEA15Q15121 130 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 FAM74A4Q5TZK3 123 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 ZFP2Q6ZN57 461 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 FER1L6-AS1Q8NA97 138 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 SFRP2Q96HF1 295 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 TPPP3Q9BW30 176 aa9.75□□□□□ -0.85
PTCH1-226ENST00000553011 TRBV6-4A0A1B0GX49 114 aa9.74□□□□□ -0.85
PTCH1-226ENST00000553011 M0R2N4 97 aa9.74□□□□□ -0.85
PTCH1-226ENST00000553011 CRYGDP07320 174 aa9.74□□□□□ -0.85
PTCH1-226ENST00000553011 SRIP30626 198 aa9.74□□□□□ -0.85
PTCH1-226ENST00000553011 FAM3BP58499 235 aaPredicted RBP9.74□□□□□ -0.85
PTCH1-226ENST00000553011 SPANXN1Q5VSR9 72 aa9.74□□□□□ -0.85
PTCH1-226ENST00000553011 ZNRF2Q8NHG8 242 aa9.74□□□□□ -0.85
PTCH1-226ENST00000553011 RPP21Q9H633 154 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms