RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CDKN1BP46527 198 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 MRPS16Q9Y3D3 137 aaKnown RBP11.58□□□□□ -0.56
CUX1-214ENST00000550008 LINC01619G3V211 115 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 HIST2H2BDQ6DRA6 164 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 ADAMTS20P59510 1910 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 COX6CP09669 75 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 DEFB130BP0DP73 79 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 DEFB130AP0DP74 79 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 PAX2Q02962 417 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 GDF5OSQ5U4N7 250 aa11.58□□□□□ -0.56
CUX1-214ENST00000550008 RNASE8Q8TDE3 154 aaKnown RBP11.58□□□□□ -0.56
CUX1-214ENST00000550008 A0A1W2PPR1 153 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 TMEM101Q96IK0 257 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 CCDC140Q96MF4 163 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 CHCHD5Q9BSY4 110 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 IGHV1OR15-1A0A075B7D0 117 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 ZNF80P51504 273 aaPredicted RBP11.57□□□□□ -0.56
CUX1-214ENST00000550008 ZNF415Q09FC8 603 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 ZNF747Q9BV97 191 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 CRYGBP07316 175 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 HIST2H2BCQ6DN03 193 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 PRORYQ9H606 182 aa11.57□□□□□ -0.56
CUX1-214ENST00000550008 SAMD5Q5TGI4 173 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 Q8N8P6 123 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 OR13C6PQ8NH95 151 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 OR9G4Q8NGQ1 327 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 YPEL4Q96NS1 127 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 SPXQ9BT56 116 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 C11orf71Q6IPW1 123 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 APRG1Q8IVJ8 170 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 RPL39LQ96EH5 51 aaKnown RBP11.56□□□□□ -0.56
CUX1-214ENST00000550008 SMIM2Q9BVW6 85 aa11.56□□□□□ -0.56
CUX1-214ENST00000550008 LY6LH3BQJ8 138 aa11.55□□□□□ -0.56
CUX1-214ENST00000550008 INSP01308 110 aa11.55□□□□□ -0.56
CUX1-214ENST00000550008 KIR3DS1Q14943 382 aa11.55□□□□□ -0.56
CUX1-214ENST00000550008 DEFB113Q30KQ7 82 aa11.55□□□□□ -0.56
CUX1-214ENST00000550008 TRAV13-1A0A0B4J241 112 aa11.55□□□□□ -0.56
CUX1-214ENST00000550008 ZNF479Q96JC4 524 aa11.55□□□□□ -0.56
CUX1-214ENST00000550008 ANKRD17O75179 2603 aaKnown RBP11.55□□□□□ -0.56
CUX1-214ENST00000550008 J3QKU1 62 aa11.55□□□□□ -0.56
CUX1-214ENST00000550008 RNASE13Q5GAN3 156 aaKnown RBP11.55□□□□□ -0.56
CUX1-214ENST00000550008 CD5LO43866 347 aa11.54□□□□□ -0.56
CUX1-214ENST00000550008 C19orf71A6NCJ1 209 aa11.54□□□□□ -0.56
CUX1-214ENST00000550008 J3QLI3 93 aa11.54□□□□□ -0.56
CUX1-214ENST00000550008 RNASE1P07998 156 aaKnown RBP11.54□□□□□ -0.56
CUX1-214ENST00000550008 ELANEP08246 267 aa11.54□□□□□ -0.56
CUX1-214ENST00000550008 TTTY13Q9BZ97 58 aa11.54□□□□□ -0.56
CUX1-214ENST00000550008 CCL25O15444 150 aa11.53□□□□□ -0.56
CUX1-214ENST00000550008 C16orf54Q6UWD8 224 aa11.53□□□□□ -0.56
CUX1-214ENST00000550008 C10orf99Q6UWK7 81 aa11.53□□□□□ -0.56
CUX1-214ENST00000550008 ZNF625Q96I27 306 aaPredicted RBP11.53□□□□□ -0.56
CUX1-214ENST00000550008 CHAC1Q9BUX1 264 aa11.53□□□□□ -0.56
CUX1-214ENST00000550008 PLNP26678 52 aa11.53□□□□□ -0.56
CUX1-214ENST00000550008 KLF5Q13887 457 aaPredicted RBP11.53□□□□□ -0.56
CUX1-214ENST00000550008 IGHV4OR15-8A0A075B7B6 117 aa11.53□□□□□ -0.56
CUX1-214ENST00000550008 A0A087WW49 117 aa11.53□□□□□ -0.56
CUX1-214ENST00000550008 TMEM238C9JI98 176 aa11.53□□□□□ -0.56
CUX1-214ENST00000550008 C11orf68Q9H3H3 251 aaKnown RBP11.53□□□□□ -0.56
CUX1-214ENST00000550008 ZNF292O60281 2723 aa11.52□□□□□ -0.56
CUX1-214ENST00000550008 IGHG2P01859 326 aa11.52□□□□□ -0.56
CUX1-214ENST00000550008 PCP2Q8IVA1 136 aa11.52□□□□□ -0.56
CUX1-214ENST00000550008 IGF1P05019 195 aa11.52□□□□□ -0.57
CUX1-214ENST00000550008 LOXL1Q08397 574 aaPredicted RBP11.52□□□□□ -0.57
CUX1-214ENST00000550008 H3BRM9 83 aa11.52□□□□□ -0.57
CUX1-214ENST00000550008 RPL36AP83881 106 aaKnown RBP11.52□□□□□ -0.57
CUX1-214ENST00000550008 RPL36ALQ969Q0 106 aaKnown RBP11.52□□□□□ -0.57
CUX1-214ENST00000550008 MLST8Q9BVC4 326 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 DSPP15924 2871 aaKnown RBP11.51□□□□□ -0.57
CUX1-214ENST00000550008 KIR2DL5BA0A0G2JN68 375 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 KIR2DL5BA0A0G2JPC4 375 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 GAGE13Q4V321 117 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 KIR2DL5AQ8N109 375 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 GAGE12JA6NER3 117 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 GAGE4Q13068 117 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 GAGE5Q13069 117 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 PCSK5Q92824 1860 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 TP73-AS1Q9UF72 201 aa11.51□□□□□ -0.57
CUX1-214ENST00000550008 LGALS1P09382 135 aaKnown RBP11.5□□□□□ -0.57
CUX1-214ENST00000550008 TRAV8-2A0A0B4J237 113 aa11.5□□□□□ -0.57
CUX1-214ENST00000550008 ANKRD39Q53RE8 183 aa11.5□□□□□ -0.57
CUX1-214ENST00000550008 FRYLO94915 3013 aa11.5□□□□□ -0.57
CUX1-214ENST00000550008 ADARB2-AS1A8MUL3 147 aa11.5□□□□□ -0.57
CUX1-214ENST00000550008 JPT2Q9H910 190 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 H3BUA1 57 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 TNFRSF13BO14836 293 aaPredicted RBP11.49□□□□□ -0.57
CUX1-214ENST00000550008 GAGE7O76087 117 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 GAGE12FP0CL80 117 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 GAGE12GP0CL81 117 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 GAGE12IP0CL82 117 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 LGALS9BQ3B8N2 356 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 LGALS9CQ6DKI2 356 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 Q6ZS46 218 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 TET2Q6N021 2002 aaPredicted RBP11.49□□□□□ -0.57
CUX1-214ENST00000550008 TP53TG3Q9ULZ0 132 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 COX8AP10176 69 aa11.49□□□□□ -0.57
CUX1-214ENST00000550008 TRPT1Q86TN4 253 aaKnown RBP11.49□□□□□ -0.57
CUX1-214ENST00000550008 K7EMI3 77 aa11.48□□□□□ -0.57
CUX1-214ENST00000550008 K7EP13 123 aa11.48□□□□□ -0.57
CUX1-214ENST00000550008 ZNRF2Q8NHG8 242 aa11.48□□□□□ -0.57
CUX1-214ENST00000550008 A6NDX4 124 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms