RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NIT2Q9NQR4 276 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 EPDR1Q9UM22 224 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 IGHV1OR15-1A0A075B7D0 117 aa10.65□□□□□ -0.7
CPSF1-208ENST00000532560 FBLL1A6NHQ2 334 aaKnown RBP10.65□□□□□ -0.7
CPSF1-208ENST00000532560 SNURFLB1AK76 121 aa10.65□□□□□ -0.7
CPSF1-208ENST00000532560 DEFB130BP0DP73 79 aa10.65□□□□□ -0.7
CPSF1-208ENST00000532560 DEFB130AP0DP74 79 aa10.65□□□□□ -0.7
CPSF1-208ENST00000532560 UBE2G2P60604 165 aa10.65□□□□□ -0.7
CPSF1-208ENST00000532560 CTAG1AP78358 180 aa10.65□□□□□ -0.7
CPSF1-208ENST00000532560 DAZ2Q13117 558 aaKnown RBP10.65□□□□□ -0.7
CPSF1-208ENST00000532560 LGALS9CQ6DKI2 356 aa10.65□□□□□ -0.7
CPSF1-208ENST00000532560 Q6ZQT7 251 aa10.65□□□□□ -0.7
CPSF1-208ENST00000532560 RYR2Q92736 4967 aa10.65□□□□□ -0.71
CPSF1-208ENST00000532560 CBY3A6NI87 242 aa10.64□□□□□ -0.71
CPSF1-208ENST00000532560 LY6G6CO95867 125 aa10.64□□□□□ -0.71
CPSF1-208ENST00000532560 IGLV2-11P01706 119 aa10.64□□□□□ -0.71
CPSF1-208ENST00000532560 HTN3P15516 51 aa10.64□□□□□ -0.71
CPSF1-208ENST00000532560 COX19Q49B96 90 aa10.64□□□□□ -0.71
CPSF1-208ENST00000532560 IBA57Q5T440 356 aaKnown RBP10.64□□□□□ -0.71
CPSF1-208ENST00000532560 TMEM75Q8N9X5 138 aa10.64□□□□□ -0.71
CPSF1-208ENST00000532560 NDFIP1Q9BT67 221 aa10.64□□□□□ -0.71
CPSF1-208ENST00000532560 NDUFAF3Q9BU61 184 aa10.64□□□□□ -0.71
CPSF1-208ENST00000532560 A0A1W2PPQ1 181 aa10.63□□□□□ -0.71
CPSF1-208ENST00000532560 TCL1AP56279 114 aa10.63□□□□□ -0.71
CPSF1-208ENST00000532560 OR10G8Q8NGN5 311 aa10.63□□□□□ -0.71
CPSF1-208ENST00000532560 GSN-AS1Q9NRJ2 163 aa10.63□□□□□ -0.71
CPSF1-208ENST00000532560 PSG8Q9UQ74 426 aa10.63□□□□□ -0.71
CPSF1-208ENST00000532560 TRAV21A0A0B4J279 112 aa10.62□□□□□ -0.71
CPSF1-208ENST00000532560 SCO2A0A1W2PP80 73 aa10.62□□□□□ -0.71
CPSF1-208ENST00000532560 IFITM10A6NMD0 228 aa10.62□□□□□ -0.71
CPSF1-208ENST00000532560 PEX7O00628 323 aa10.62□□□□□ -0.71
CPSF1-208ENST00000532560 ATP5G1P05496 136 aa10.62□□□□□ -0.71
CPSF1-208ENST00000532560 SGK494Q96LW2 274 aa10.62□□□□□ -0.71
CPSF1-208ENST00000532560 TDRG1Q3Y452 100 aa10.61□□□□□ -0.71
CPSF1-208ENST00000532560 MUC21Q5SSG8 566 aa10.61□□□□□ -0.71
CPSF1-208ENST00000532560 IL36BQ9NZH7 164 aa10.61□□□□□ -0.71
CPSF1-208ENST00000532560 TP53TG3Q9ULZ0 132 aa10.61□□□□□ -0.71
CPSF1-208ENST00000532560 TRGV11A0A075B6L2 103 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 ZNF415Q09FC8 603 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 FAM159AQ6UWV7 190 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 Q6ZTI0 123 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 PRNTQ86SH4 94 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 OR10D4PQ8NGN7 298 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 C18orf15Q96N68 181 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 C8orf49Q96NF6 230 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 OSTCQ9NRP0 149 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 KLF12Q9Y4X4 402 aa10.6□□□□□ -0.71
CPSF1-208ENST00000532560 GAGE12BA1L429 117 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 XKRY2A2RUG3 117 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 F5H768 121 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 SPINK4O60575 86 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 GAGE7O76087 117 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 GAGE12FP0CL80 117 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 GAGE12GP0CL81 117 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 GAGE12IP0CL82 117 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 GNG4P50150 75 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 PYY3Q5JQD4 70 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 SAPCD1Q5SSQ6 148 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 Q86TA4 180 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 OCC1Q8TAD7 63 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 LINC00479Q96M42 142 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 PACRGQ96M98 296 aaPredicted RBP10.59□□□□□ -0.71
CPSF1-208ENST00000532560 DERL1Q9BUN8 251 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 NAGKQ9UJ70 344 aa10.59□□□□□ -0.71
CPSF1-208ENST00000532560 TRBV20OR9-2A0A075B6H5 130 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 TRAV34A0A0B4J273 112 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 GCGP01275 180 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 TMEM183BQ1AE95 376 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 LGALS9BQ3B8N2 356 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 C15orf53Q8NAA6 179 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 TMEM18Q96B42 140 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 SMIM12Q96EX1 92 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 HIST1H2BLQ99880 126 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 TRAPPC1Q9Y5R8 145 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 HYDINQ4G0P3 5121 aa10.58□□□□□ -0.72
CPSF1-208ENST00000532560 TRGV1A0A0A0MS02 117 aa10.57□□□□□ -0.72
CPSF1-208ENST00000532560 MT-ND6P03923 174 aa10.57□□□□□ -0.72
CPSF1-208ENST00000532560 FABP4P15090 132 aa10.57□□□□□ -0.72
CPSF1-208ENST00000532560 ZNF80P51504 273 aaPredicted RBP10.57□□□□□ -0.72
CPSF1-208ENST00000532560 WDR73Q6P4I2 378 aa10.57□□□□□ -0.72
CPSF1-208ENST00000532560 FMC1Q96HJ9 113 aa10.57□□□□□ -0.72
CPSF1-208ENST00000532560 KCNS1Q96KK3 526 aa10.57□□□□□ -0.72
CPSF1-208ENST00000532560 MDFICQ9P1T7 246 aa10.57□□□□□ -0.72
CPSF1-208ENST00000532560 TRGV2A0A075B6R0 118 aa10.56□□□□□ -0.72
CPSF1-208ENST00000532560 P0DMU3 169 aa10.56□□□□□ -0.72
CPSF1-208ENST00000532560 FAM231AP0DMU4 169 aa10.56□□□□□ -0.72
CPSF1-208ENST00000532560 FAM231CP0DMU5 169 aa10.56□□□□□ -0.72
CPSF1-208ENST00000532560 JOSD1Q15040 202 aaPredicted RBP10.56□□□□□ -0.72
CPSF1-208ENST00000532560 CENPWQ5EE01 88 aa10.56□□□□□ -0.72
CPSF1-208ENST00000532560 SPXQ9BT56 116 aa10.56□□□□□ -0.72
CPSF1-208ENST00000532560 EPPK1P58107 5090 aaKnown RBP10.55□□□□□ -0.72
CPSF1-208ENST00000532560 IGHV3-16A0A0C4DH30 117 aa10.55□□□□□ -0.72
CPSF1-208ENST00000532560 TRBV6-1A0A0K0K1D8 114 aa10.55□□□□□ -0.72
CPSF1-208ENST00000532560 ERVFC1-1P60608 527 aa10.55□□□□□ -0.72
CPSF1-208ENST00000532560 UBE2G1P62253 170 aa10.55□□□□□ -0.72
CPSF1-208ENST00000532560 COX8CQ7Z4L0 72 aa10.55□□□□□ -0.72
CPSF1-208ENST00000532560 GNB1LQ9BYB4 327 aa10.55□□□□□ -0.72
CPSF1-208ENST00000532560 MRPL16Q9NX20 251 aaKnown RBP10.55□□□□□ -0.72
CPSF1-208ENST00000532560 C11orf21Q9P2W6 132 aa10.55□□□□□ -0.72
CPSF1-208ENST00000532560 ZFP30Q9Y2G7 519 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms