RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 TRGV2A0A075B6R0 118 aa10.18□□□□□ -0.78
HMGN1-216ENST00000486741 HOXD3P31249 432 aaPredicted RBP10.18□□□□□ -0.78
HMGN1-216ENST00000486741 Q6ZS46 218 aa10.18□□□□□ -0.78
HMGN1-216ENST00000486741 VPREB3Q9UKI3 123 aa10.18□□□□□ -0.78
HMGN1-216ENST00000486741 TP53TG3Q9ULZ0 132 aa10.18□□□□□ -0.78
HMGN1-216ENST00000486741 CHTOPQ9Y3Y2 248 aaKnown RBP10.18□□□□□ -0.78
HMGN1-216ENST00000486741 APOMO95445 188 aa10.18□□□□□ -0.78
HMGN1-216ENST00000486741 SLURP1P55000 103 aa10.18□□□□□ -0.78
HMGN1-216ENST00000486741 SAMD5Q5TGI4 173 aa10.18□□□□□ -0.78
HMGN1-216ENST00000486741 MRPS16Q9Y3D3 137 aaKnown RBP10.18□□□□□ -0.78
HMGN1-216ENST00000486741 H7C1H1 209 aa10.17□□□□□ -0.78
HMGN1-216ENST00000486741 DEFB113Q30KQ7 82 aa10.17□□□□□ -0.78
HMGN1-216ENST00000486741 GEMIN7Q9H840 131 aaKnown RBP10.17□□□□□ -0.78
HMGN1-216ENST00000486741 KIR2DL5BA0A0G2JN68 375 aa10.17□□□□□ -0.78
HMGN1-216ENST00000486741 KIR2DL5BA0A0G2JPC4 375 aa10.17□□□□□ -0.78
HMGN1-216ENST00000486741 IGF1P05019 195 aa10.17□□□□□ -0.78
HMGN1-216ENST00000486741 KIR2DL5AQ8N109 375 aa10.17□□□□□ -0.78
HMGN1-216ENST00000486741 TMEM190Q8WZ59 177 aa10.17□□□□□ -0.78
HMGN1-216ENST00000486741 MRPL16Q9NX20 251 aaKnown RBP10.17□□□□□ -0.78
HMGN1-216ENST00000486741 IGHG2P01859 326 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 SEC11AP67812 179 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 OR5A1Q8NGJ0 315 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 DKK2Q9UBU2 259 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 IGHV3-16A0A0C4DH30 117 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 CRIP1P50238 77 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 C16orf54Q6UWD8 224 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 SNCGO76070 127 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 FSTL3O95633 263 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 SUMO2P61956 95 aaKnown RBP10.16□□□□□ -0.78
HMGN1-216ENST00000486741 PHLDA1Q8WV24 401 aaPredicted RBP10.16□□□□□ -0.78
HMGN1-216ENST00000486741 MBD6Q96DN6 1003 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 MYCNOSP40205 109 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 KLF5Q13887 457 aaPredicted RBP10.16□□□□□ -0.78
HMGN1-216ENST00000486741 VCX2Q9H322 139 aa10.16□□□□□ -0.78
HMGN1-216ENST00000486741 K7EP13 123 aa10.15□□□□□ -0.78
HMGN1-216ENST00000486741 ZNF747Q9BV97 191 aa10.15□□□□□ -0.78
HMGN1-216ENST00000486741 TRGV1A0A0A0MS02 117 aa10.15□□□□□ -0.78
HMGN1-216ENST00000486741 EBI3Q14213 229 aa10.15□□□□□ -0.78
HMGN1-216ENST00000486741 WDFY3Q8IZQ1 3526 aa10.15□□□□□ -0.78
HMGN1-216ENST00000486741 CD5LO43866 347 aa10.15□□□□□ -0.79
HMGN1-216ENST00000486741 LOXL1Q08397 574 aaPredicted RBP10.15□□□□□ -0.79
HMGN1-216ENST00000486741 SMAD5-AS1Q9Y6J3 95 aa10.15□□□□□ -0.79
HMGN1-216ENST00000486741 CFAP47Q6ZTR5 3102 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 FLNBO75369 2602 aaKnown RBP10.14□□□□□ -0.79
HMGN1-216ENST00000486741 TRGV11A0A075B6L2 103 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 J3QLI3 93 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 UBE2L6O14933 153 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 TSSC4Q9Y5U2 329 aaPredicted RBP10.14□□□□□ -0.79
HMGN1-216ENST00000486741 VWC2LB2RUY7 222 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 KIR3DS1Q14943 382 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 A0A0U1RRA0 63 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 A6NDX4 124 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 LINC01619G3V211 115 aa10.14□□□□□ -0.79
HMGN1-216ENST00000486741 IGHV4OR15-8A0A075B7B6 117 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 A0A087WW49 117 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 AVPP01185 164 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 HSD52Q0P140 79 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 C2orf66Q6UXQ4 117 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 ZNF815PA8K554 130 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 MRGPRG-AS1Q2M3A8 158 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 RPL39LQ96EH5 51 aaKnown RBP10.13□□□□□ -0.79
HMGN1-216ENST00000486741 TP73-AS1Q9UF72 201 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 A0A1B0GXF2 115 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 AZU1P20160 251 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 APRG1Q8IVJ8 170 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 Q8N6K4 173 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 ZNF479Q96JC4 524 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 TMEM238LA0A1B0GVL6 79 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 A6NJY4 79 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 J3QKU1 62 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 IGLV2-11P01706 119 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 ETDBQ3ZM63 59 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 MRPL35Q9NZE8 188 aaKnown RBP10.13□□□□□ -0.79
HMGN1-216ENST00000486741 RNF114Q9Y508 228 aa10.13□□□□□ -0.79
HMGN1-216ENST00000486741 ADAMTSL5Q6ZMM2 481 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 Q8N8P6 123 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 ATMQ13315 3056 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 ELANEP08246 267 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 CD28P10747 220 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 HTN3P15516 51 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 IGHV1OR15-1A0A075B7D0 117 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 VCYO14598 125 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 CFHR3Q02985 330 aa10.12□□□□□ -0.79
HMGN1-216ENST00000486741 ZNF48Q96MX3 618 aaPredicted RBP10.12□□□□□ -0.79
HMGN1-216ENST00000486741 TRAV8-2A0A0B4J237 113 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 SDHAF1A6NFY7 115 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 TMEM262E9PQX1 116 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 GAGE13Q4V321 117 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 CITED1Q99966 193 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 ZFAND3Q9H8U3 227 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 TP53TG1Q9Y2A0 90 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 H3BUA1 57 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 SPINK8P0C7L1 97 aa10.11□□□□□ -0.79
HMGN1-216ENST00000486741 SMIM2Q9BVW6 85 aa10.1□□□□□ -0.79
HMGN1-216ENST00000486741 TTTY13Q9BZ97 58 aa10.1□□□□□ -0.79
HMGN1-216ENST00000486741 HECTD1Q9ULT8 2610 aa10.1□□□□□ -0.79
HMGN1-216ENST00000486741 IGHV3-38A0A0C4DH36 116 aa10.1□□□□□ -0.79
HMGN1-216ENST00000486741 LGALS1P09382 135 aaKnown RBP10.1□□□□□ -0.79
HMGN1-216ENST00000486741 C19orf54Q5BKX5 351 aa10.1□□□□□ -0.79
HMGN1-216ENST00000486741 PAPPA-AS1Q5QFB9 102 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms