RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PRO0255Q9UI72 69 aa10.27□□□□□ -0.77
USP4-212ENST00000486549 HHLA3Q9XRX5 114 aa10.27□□□□□ -0.77
USP4-212ENST00000486549 IGLV2-18A0A075B6J9 118 aa10.26□□□□□ -0.77
USP4-212ENST00000486549 A0A096LPF7 62 aa10.26□□□□□ -0.77
USP4-212ENST00000486549 RAB19A4D1S5 217 aa10.26□□□□□ -0.77
USP4-212ENST00000486549 M0R2N4 97 aa10.26□□□□□ -0.77
USP4-212ENST00000486549 MGST1P10620 155 aaKnown RBP10.26□□□□□ -0.77
USP4-212ENST00000486549 TAGLN2P37802 199 aaKnown RBP10.26□□□□□ -0.77
USP4-212ENST00000486549 CRYBA4P53673 196 aa10.26□□□□□ -0.77
USP4-212ENST00000486549 LINC01559Q495D7 138 aa10.26□□□□□ -0.77
USP4-212ENST00000486549 ARMS2P0C7Q2 107 aa10.25□□□□□ -0.77
USP4-212ENST00000486549 GNG4P50150 75 aa10.25□□□□□ -0.77
USP4-212ENST00000486549 RPL19P84098 196 aaKnown RBP10.25□□□□□ -0.77
USP4-212ENST00000486549 SLAQ13239 276 aa10.25□□□□□ -0.77
USP4-212ENST00000486549 IL36BQ9NZH7 164 aa10.25□□□□□ -0.77
USP4-212ENST00000486549 LINC00588Q9Y4M8 146 aa10.25□□□□□ -0.77
USP4-212ENST00000486549 ICOSQ9Y6W8 199 aa10.25□□□□□ -0.77
USP4-212ENST00000486549 IGHV3-73A0A0B4J1V6 119 aa10.24□□□□□ -0.77
USP4-212ENST00000486549 RBFOX3A6NFN3 312 aa10.24□□□□□ -0.77
USP4-212ENST00000486549 RS1O15537 224 aa10.24□□□□□ -0.77
USP4-212ENST00000486549 CFAP126Q5VTH2 177 aa10.24□□□□□ -0.77
USP4-212ENST00000486549 ESRGQ1W209 222 aa10.23□□□□□ -0.77
USP4-212ENST00000486549 TOR2AQ5JU69 321 aa10.23□□□□□ -0.77
USP4-212ENST00000486549 DNLZQ5SXM8 178 aa10.23□□□□□ -0.77
USP4-212ENST00000486549 LINC00336Q6ZUF6 198 aa10.23□□□□□ -0.77
USP4-212ENST00000486549 LYPD6BQ8NI32 183 aa10.23□□□□□ -0.77
USP4-212ENST00000486549 PCNPQ8WW12 178 aaKnown RBP10.23□□□□□ -0.77
USP4-212ENST00000486549 PTH2Q96A98 100 aa10.23□□□□□ -0.77
USP4-212ENST00000486549 IGLV2-8P01709 118 aa10.22□□□□□ -0.77
USP4-212ENST00000486549 GYPEP15421 78 aa10.22□□□□□ -0.77
USP4-212ENST00000486549 FAM3BP58499 235 aaPredicted RBP10.22□□□□□ -0.77
USP4-212ENST00000486549 ZNF575Q86XF7 245 aa10.22□□□□□ -0.77
USP4-212ENST00000486549 SYT8Q8NBV8 401 aa10.22□□□□□ -0.77
USP4-212ENST00000486549 PHLDA3Q9Y5J5 127 aa10.22□□□□□ -0.77
USP4-212ENST00000486549 EPPK1P58107 5090 aaKnown RBP10.21□□□□□ -0.77
USP4-212ENST00000486549 TRBV20OR9-2A0A075B6H5 130 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 LOC100131303A0A0U1RQF7 123 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 K7EQD1 137 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 M0R381 172 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 GATA1P15976 413 aaPredicted RBP10.21□□□□□ -0.77
USP4-212ENST00000486549 SRIP30626 198 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 CEBPGP53567 150 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 MRPL23Q16540 153 aaKnown RBP10.21□□□□□ -0.77
USP4-212ENST00000486549 DMRTA1Q5VZB9 504 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 ZNRF2Q8NHG8 242 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 DAZAP1Q96EP5 407 aaKnown RBP10.21□□□□□ -0.77
USP4-212ENST00000486549 EIF5A2Q9GZV4 153 aaKnown RBP10.21□□□□□ -0.77
USP4-212ENST00000486549 JPT2Q9H910 190 aa10.21□□□□□ -0.77
USP4-212ENST00000486549 DNAH10Q8IVF4 4471 aa10.2□□□□□ -0.78
USP4-212ENST00000486549 A8MWV9 139 aa10.2□□□□□ -0.78
USP4-212ENST00000486549 PARLQ9H300 379 aa10.2□□□□□ -0.78
USP4-212ENST00000486549 SCRT2Q9NQ03 307 aa10.2□□□□□ -0.78
USP4-212ENST00000486549 FAM74A4Q5TZK3 123 aa10.19□□□□□ -0.78
USP4-212ENST00000486549 TEX261Q6UWH6 196 aa10.19□□□□□ -0.78
USP4-212ENST00000486549 NEGR1Q7Z3B1 354 aa10.19□□□□□ -0.78
USP4-212ENST00000486549 ZFP82Q8N141 532 aa10.19□□□□□ -0.78
USP4-212ENST00000486549 SLC25A29Q8N8R3 303 aa10.19□□□□□ -0.78
USP4-212ENST00000486549 SMIM12Q96EX1 92 aa10.19□□□□□ -0.78
USP4-212ENST00000486549 MRPS16Q9Y3D3 137 aaKnown RBP10.19□□□□□ -0.78
USP4-212ENST00000486549 MUC21A0A0G2JKD1 596 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 MUC21A0A140T8X8 626 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 TMEM250H0YL14 139 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 CIDEAO60543 219 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 CXCL1P09341 107 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 MED14OSP0DP75 135 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 GZMBP10144 247 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 SSTP61278 116 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 RHOHQ15669 191 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 PIK3CD-AS1Q5SR53 167 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 OR2D3Q8NGH3 330 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 OR10AG1Q8NH19 301 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 FAM210AQ96ND0 272 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 PRADC1Q9BSG0 188 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 SAMD10Q9BYL1 202 aa10.18□□□□□ -0.78
USP4-212ENST00000486549 A0A087WWL8 130 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 C19orf71A6NCJ1 209 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 P01737 135 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 SOHLH1Q5JUK2 328 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 LYPD5Q6UWN5 251 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 ZFP2Q6ZN57 461 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 TPPP3Q9BW30 176 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 Q9H8V8 135 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 BIN3Q9NQY0 253 aa10.17□□□□□ -0.78
USP4-212ENST00000486549 NBDYA0A0U1RRE5 68 aa10.16□□□□□ -0.78
USP4-212ENST00000486549 TRBV6-4A0A1B0GX49 114 aa10.16□□□□□ -0.78
USP4-212ENST00000486549 Q6ZR54 194 aa10.16□□□□□ -0.78
USP4-212ENST00000486549 Q6ZSN1 163 aa10.16□□□□□ -0.78
USP4-212ENST00000486549 OCC1Q8TAD7 63 aa10.16□□□□□ -0.78
USP4-212ENST00000486549 SFRP2Q96HF1 295 aa10.16□□□□□ -0.78
USP4-212ENST00000486549 UPK3BQ9BT76 320 aa10.16□□□□□ -0.78
USP4-212ENST00000486549 K7EN84 100 aa10.15□□□□□ -0.78
USP4-212ENST00000486549 RHODO00212 210 aa10.15□□□□□ -0.78
USP4-212ENST00000486549 SNAI2O43623 268 aa10.15□□□□□ -0.78
USP4-212ENST00000486549 NXPH4O95158 308 aa10.15□□□□□ -0.78
USP4-212ENST00000486549 RPS20P60866 119 aaKnown RBP10.15□□□□□ -0.78
USP4-212ENST00000486549 SPANXN1Q5VSR9 72 aa10.15□□□□□ -0.78
USP4-212ENST00000486549 DNAH2Q9P225 4427 aa10.15□□□□□ -0.78
USP4-212ENST00000486549 BIRC6Q9NR09 4857 aa10.15□□□□□ -0.78
USP4-212ENST00000486549 FRAS1Q86XX4 4008 aa10.15□□□□□ -0.79
USP4-212ENST00000486549 SRP19P09132 144 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms