RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PRSS2P07478 247 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 C12orf74Q32Q52 190 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 LINC00477Q96M19 166 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 BEX4Q9NWD9 120 aaPredicted RBP9.12□□□□□ -0.95
MSH6-204ENST00000445503 F8VRH5 84 aa9.11□□□□□ -0.95
MSH6-204ENST00000445503 OVOL1O14753 267 aa9.11□□□□□ -0.95
MSH6-204ENST00000445503 MAPKAPK5-AS1Q8N8E1 139 aa9.11□□□□□ -0.95
MSH6-204ENST00000445503 SIGMAR1Q99720 223 aa9.11□□□□□ -0.95
MSH6-204ENST00000445503 PRADC1Q9BSG0 188 aa9.11□□□□□ -0.95
MSH6-204ENST00000445503 TSSC4Q9Y5U2 329 aaPredicted RBP9.11□□□□□ -0.95
MSH6-204ENST00000445503 UNQ9165/PRO28630Q6UXU0 137 aa9.11□□□□□ -0.95
MSH6-204ENST00000445503 SS18L2Q9UHA2 77 aa9.11□□□□□ -0.95
MSH6-204ENST00000445503 WNK1Q9H4A3 2382 aa9.11□□□□□ -0.95
MSH6-204ENST00000445503 LGALS3P17931 250 aaKnown RBP9.11□□□□□ -0.95
MSH6-204ENST00000445503 TTC32Q5I0X7 151 aa9.1□□□□□ -0.95
MSH6-204ENST00000445503 KLHL30-AS1Q8NEE0 82 aa9.1□□□□□ -0.95
MSH6-204ENST00000445503 LAMA5O15230 3695 aa9.1□□□□□ -0.95
MSH6-204ENST00000445503 HERV-K104P63124 156 aa9.1□□□□□ -0.95
MSH6-204ENST00000445503 MYMXA0A1B0GTQ4 84 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 PRSS29PA6NIE9 313 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 MRAP2Q96G30 205 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 DUX5Q96PT3 197 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 ZFAND3Q9H8U3 227 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 TP53TG1Q9Y2A0 90 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 TLN2Q9Y4G6 2542 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 AGRNO00468 2067 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 LINC01549A6NIU2 74 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 IGLL5B9A064 214 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 C1orf122Q6ZSJ8 110 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 PIP4P2Q8N4L2 257 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 ANAPC13Q9BS18 74 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 IGHV3-73A0A0B4J1V6 119 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 HLA-DRB4P13762 266 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 SIRPDQ9H106 197 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 HLA-DRB4X5D2U9 266 aa9.09□□□□□ -0.95
MSH6-204ENST00000445503 USP9XQ93008 2570 aaPredicted RBP9.09□□□□□ -0.95
MSH6-204ENST00000445503 SETD2Q9BYW2 2564 aaPredicted RBP9.09□□□□□ -0.95
MSH6-204ENST00000445503 TRAV12-2A0A075B6T6 113 aa9.09□□□□□ -0.96
MSH6-204ENST00000445503 RBAKDNA6NC62 111 aa9.08□□□□□ -0.96
MSH6-204ENST00000445503 IGHG4P01861 327 aa9.08□□□□□ -0.96
MSH6-204ENST00000445503 PIEZO1Q92508 2521 aa9.08□□□□□ -0.96
MSH6-204ENST00000445503 BLCAPP62952 87 aa9.08□□□□□ -0.96
MSH6-204ENST00000445503 GATD1Q8NB37 220 aa9.08□□□□□ -0.96
MSH6-204ENST00000445503 JPT2Q9H910 190 aa9.08□□□□□ -0.96
MSH6-204ENST00000445503 TRAV8-2A0A0B4J237 113 aa9.07□□□□□ -0.96
MSH6-204ENST00000445503 LRBAP50851 2863 aa9.07□□□□□ -0.96
MSH6-204ENST00000445503 G3V4G9 280 aa9.07□□□□□ -0.96
MSH6-204ENST00000445503 PRR9Q5T870 116 aa9.07□□□□□ -0.96
MSH6-204ENST00000445503 C20orf173Q96LM9 149 aa9.07□□□□□ -0.96
MSH6-204ENST00000445503 CCL19Q99731 98 aa9.07□□□□□ -0.96
MSH6-204ENST00000445503 DUSP14O95147 198 aaKnown RBP9.07□□□□□ -0.96
MSH6-204ENST00000445503 HHLA3Q9XRX5 114 aa9.07□□□□□ -0.96
MSH6-204ENST00000445503 TRAV2A0A0B4J234 112 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 PPP1R17O96001 155 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 GNLYP22749 145 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 TMEM95Q3KNT9 176 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 C5orf56Q8N8D9 126 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 FAM223BA6NKX1 122 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 FAM223AQ8IWN6 122 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 SYT8Q8NBV8 401 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 KLK9Q9UKQ9 250 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 IGHV1-69DA0A0B4J2H0 117 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 IGHV1-69P01742 117 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 AZU1P20160 251 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 Q8N6K4 173 aa9.06□□□□□ -0.96
MSH6-204ENST00000445503 C9orf47Q6ZRZ4 202 aa9.05□□□□□ -0.96
MSH6-204ENST00000445503 RAX2Q96IS3 184 aa9.05□□□□□ -0.96
MSH6-204ENST00000445503 SNRPD3P62318 126 aaKnown RBP9.05□□□□□ -0.96
MSH6-204ENST00000445503 RPL39P62891 51 aaKnown RBP9.05□□□□□ -0.96
MSH6-204ENST00000445503 CLPSL1A2RUU4 121 aa9.05□□□□□ -0.96
MSH6-204ENST00000445503 IGHV4-38-2P0DP08 117 aa9.05□□□□□ -0.96
MSH6-204ENST00000445503 GEMIN7Q9H840 131 aaKnown RBP9.05□□□□□ -0.96
MSH6-204ENST00000445503 HIGD1BQ9P298 99 aa9.05□□□□□ -0.96
MSH6-204ENST00000445503 NBL1P41271 181 aa9.05□□□□□ -0.96
MSH6-204ENST00000445503 FBXL19-AS1Q494R0 122 aa9.05□□□□□ -0.96
MSH6-204ENST00000445503 FOXI2Q6ZQN5 318 aa9.05□□□□□ -0.96
MSH6-204ENST00000445503 SDHAF1A6NFY7 115 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 RRN3P1Q2M238 152 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 NRACQ8N912 160 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 TRAV26-1A0A087WT03 109 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 IGHV7-4-1A0A0J9YVY3 117 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 VCYO14598 125 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 SPINK13Q1W4C9 94 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 UFSP1Q6NVU6 142 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 DAZ1Q9NQZ3 744 aaKnown RBP9.04□□□□□ -0.96
MSH6-204ENST00000445503 YAE1D1Q9NRH1 226 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 A0A1W2PPR1 153 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 EBI3Q14213 229 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 DGAT2L7PQ6IED9 249 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 MAPK1IP1LQ8NDC0 245 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 RASL10AQ92737 203 aa9.04□□□□□ -0.96
MSH6-204ENST00000445503 SONP18583 2426 aaKnown RBP9.04□□□□□ -0.96
MSH6-204ENST00000445503 POLQO75417 2590 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 IGHV3OR16-12A0A075B7B8 117 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 NDUFA4O00483 81 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 GAGE12HA6NDE8 117 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 ZNF876PQ49A33 203 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 DLX4Q92988 240 aaPredicted RBP9.03□□□□□ -0.96
MSH6-204ENST00000445503 IGHV4-61A0A0C4DH41 118 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 F8W1H4 67 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms