RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 CENPWQ5EE01 88 aa11.81□□□□□ -0.52
CLN3-203ENST00000357806 DNLZQ5SXM8 178 aa11.81□□□□□ -0.52
CLN3-203ENST00000357806 H3BVH4 76 aa11.8□□□□□ -0.52
CLN3-203ENST00000357806 ZNF506Q5JVG8 444 aa11.8□□□□□ -0.52
CLN3-203ENST00000357806 PRR27Q6MZM9 219 aa11.8□□□□□ -0.52
CLN3-203ENST00000357806 LYPD6BQ8NI32 183 aa11.8□□□□□ -0.52
CLN3-203ENST00000357806 SMIM12Q96EX1 92 aa11.8□□□□□ -0.52
CLN3-203ENST00000357806 MED9Q9NWA0 146 aa11.8□□□□□ -0.52
CLN3-203ENST00000357806 ICOSQ9Y6W8 199 aa11.8□□□□□ -0.52
CLN3-203ENST00000357806 TMSB15BA0A087X1C1 80 aa11.79□□□□□ -0.52
CLN3-203ENST00000357806 A0A096LPF7 62 aa11.79□□□□□ -0.52
CLN3-203ENST00000357806 PGPEP1LA6NFU8 196 aa11.79□□□□□ -0.52
CLN3-203ENST00000357806 GNG4P50150 75 aa11.79□□□□□ -0.52
CLN3-203ENST00000357806 GRIFINA4D1Z8 144 aa11.78□□□□□ -0.52
CLN3-203ENST00000357806 CIDEAO60543 219 aa11.78□□□□□ -0.52
CLN3-203ENST00000357806 PIK3CD-AS1Q5SR53 167 aa11.78□□□□□ -0.52
CLN3-203ENST00000357806 LINC00588Q9Y4M8 146 aa11.78□□□□□ -0.52
CLN3-203ENST00000357806 RS1O15537 224 aa11.77□□□□□ -0.52
CLN3-203ENST00000357806 ARMS2P0C7Q2 107 aa11.77□□□□□ -0.52
CLN3-203ENST00000357806 CFAP126Q5VTH2 177 aa11.77□□□□□ -0.52
CLN3-203ENST00000357806 SYT8Q8NBV8 401 aa11.77□□□□□ -0.52
CLN3-203ENST00000357806 PCNPQ8WW12 178 aaKnown RBP11.77□□□□□ -0.52
CLN3-203ENST00000357806 RAB19A4D1S5 217 aa11.76□□□□□ -0.53
CLN3-203ENST00000357806 RBFOX3A6NFN3 312 aa11.76□□□□□ -0.53
CLN3-203ENST00000357806 A8MWV9 139 aa11.76□□□□□ -0.53
CLN3-203ENST00000357806 CXCL1P09341 107 aa11.76□□□□□ -0.53
CLN3-203ENST00000357806 MGST1P10620 155 aaKnown RBP11.76□□□□□ -0.53
CLN3-203ENST00000357806 PHLDA3Q9Y5J5 127 aa11.76□□□□□ -0.53
CLN3-203ENST00000357806 IGLV2-18A0A075B6J9 118 aa11.76□□□□□ -0.53
CLN3-203ENST00000357806 RPL19P84098 196 aaKnown RBP11.76□□□□□ -0.53
CLN3-203ENST00000357806 MRPL23Q16540 153 aaKnown RBP11.76□□□□□ -0.53
CLN3-203ENST00000357806 IGLV2-8P01709 118 aa11.75□□□□□ -0.53
CLN3-203ENST00000357806 MED14OSP0DP75 135 aa11.75□□□□□ -0.53
CLN3-203ENST00000357806 GATA1P15976 413 aaPredicted RBP11.75□□□□□ -0.53
CLN3-203ENST00000357806 ESRGQ1W209 222 aa11.75□□□□□ -0.53
CLN3-203ENST00000357806 ZNF575Q86XF7 245 aa11.75□□□□□ -0.53
CLN3-203ENST00000357806 ZNRF2Q8NHG8 242 aa11.75□□□□□ -0.53
CLN3-203ENST00000357806 SCRT2Q9NQ03 307 aa11.75□□□□□ -0.53
CLN3-203ENST00000357806 BIN3Q9NQY0 253 aa11.75□□□□□ -0.53
CLN3-203ENST00000357806 TRBV20OR9-2A0A075B6H5 130 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 TMEM250H0YL14 139 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 K7EQD1 137 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 M0R2N4 97 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 GYPEP15421 78 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 SRIP30626 198 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 TOR2AQ5JU69 321 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 DMRTA1Q5VZB9 504 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 TEX261Q6UWH6 196 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 ZFP82Q8N141 532 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 DAZAP1Q96EP5 407 aaKnown RBP11.74□□□□□ -0.53
CLN3-203ENST00000357806 PARLQ9H300 379 aa11.74□□□□□ -0.53
CLN3-203ENST00000357806 IGHV3-73A0A0B4J1V6 119 aa11.73□□□□□ -0.53
CLN3-203ENST00000357806 ZFP2Q6ZN57 461 aa11.73□□□□□ -0.53
CLN3-203ENST00000357806 NEGR1Q7Z3B1 354 aa11.73□□□□□ -0.53
CLN3-203ENST00000357806 UPK3BQ9BT76 320 aa11.73□□□□□ -0.53
CLN3-203ENST00000357806 EIF5A2Q9GZV4 153 aaKnown RBP11.73□□□□□ -0.53
CLN3-203ENST00000357806 MRPS16Q9Y3D3 137 aaKnown RBP11.73□□□□□ -0.53
CLN3-203ENST00000357806 TRBV6-4A0A1B0GX49 114 aa11.72□□□□□ -0.53
CLN3-203ENST00000357806 M0R381 172 aa11.72□□□□□ -0.53
CLN3-203ENST00000357806 RHOHQ15669 191 aa11.72□□□□□ -0.53
CLN3-203ENST00000357806 FAM210AQ96ND0 272 aa11.72□□□□□ -0.53
CLN3-203ENST00000357806 FRAS1Q86XX4 4008 aa11.72□□□□□ -0.53
CLN3-203ENST00000357806 C19orf71A6NCJ1 209 aa11.71□□□□□ -0.53
CLN3-203ENST00000357806 RHODO00212 210 aa11.71□□□□□ -0.53
CLN3-203ENST00000357806 Q6ZR54 194 aa11.71□□□□□ -0.53
CLN3-203ENST00000357806 SLC25A29Q8N8R3 303 aa11.71□□□□□ -0.53
CLN3-203ENST00000357806 PRADC1Q9BSG0 188 aa11.71□□□□□ -0.53
CLN3-203ENST00000357806 NDUFS6O75380 124 aaKnown RBP11.7□□□□□ -0.54
CLN3-203ENST00000357806 Q9H8V8 135 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 LOC100131303A0A0U1RQF7 123 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 SNAI2O43623 268 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 P01737 135 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 OR5AL1P0C617 328 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 RPS20P60866 119 aaKnown RBP11.7□□□□□ -0.54
CLN3-203ENST00000357806 SH2D6Q7Z4S9 175 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 OR2D3Q8NGH3 330 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 SFRP2Q96HF1 295 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 JPT2Q9H910 190 aa11.7□□□□□ -0.54
CLN3-203ENST00000357806 NBDYA0A0U1RRE5 68 aa11.69□□□□□ -0.54
CLN3-203ENST00000357806 XKRY2A2RUG3 117 aa11.69□□□□□ -0.54
CLN3-203ENST00000357806 CEBPGP53567 150 aa11.69□□□□□ -0.54
CLN3-203ENST00000357806 FAM74A4Q5TZK3 123 aa11.69□□□□□ -0.54
CLN3-203ENST00000357806 LYPD5Q6UWN5 251 aa11.69□□□□□ -0.54
CLN3-203ENST00000357806 OR10AG1Q8NH19 301 aa11.69□□□□□ -0.54
CLN3-203ENST00000357806 SSBP4Q9BWG4 385 aaPredicted RBP11.69□□□□□ -0.54
CLN3-203ENST00000357806 SAMD10Q9BYL1 202 aa11.69□□□□□ -0.54
CLN3-203ENST00000357806 NXPH4O95158 308 aa11.68□□□□□ -0.54
CLN3-203ENST00000357806 SPANXN1Q5VSR9 72 aa11.68□□□□□ -0.54
CLN3-203ENST00000357806 UFSP1Q6NVU6 142 aa11.68□□□□□ -0.54
CLN3-203ENST00000357806 TTC32Q5I0X7 151 aa11.67□□□□□ -0.54
CLN3-203ENST00000357806 OCC1Q8TAD7 63 aa11.67□□□□□ -0.54
CLN3-203ENST00000357806 A0A087WWL8 130 aa11.66□□□□□ -0.54
CLN3-203ENST00000357806 K7EN84 100 aa11.66□□□□□ -0.54
CLN3-203ENST00000357806 SOHLH1Q5JUK2 328 aa11.66□□□□□ -0.54
CLN3-203ENST00000357806 FER1L6-AS1Q8NA97 138 aa11.66□□□□□ -0.54
CLN3-203ENST00000357806 SIVA1O15304 175 aa11.65□□□□□ -0.54
CLN3-203ENST00000357806 IGLC6P0CF74 106 aa11.65□□□□□ -0.54
CLN3-203ENST00000357806 GZMBP10144 247 aa11.65□□□□□ -0.54
CLN3-203ENST00000357806 Q6ZSN1 163 aa11.65□□□□□ -0.54
CLN3-203ENST00000357806 LINC00336Q6ZUF6 198 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 273 ms