RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 A0A1W2PPQ1 181 aa11.15□□□□□ -0.62
CLN3-201ENST00000333496 CBY3A6NI87 242 aa11.15□□□□□ -0.62
CLN3-201ENST00000333496 ANXA2RQ3ZCQ2 193 aa11.15□□□□□ -0.62
CLN3-201ENST00000333496 TMEM183AQ8IXX5 376 aa11.15□□□□□ -0.62
CLN3-201ENST00000333496 C11orf52Q96A22 123 aa11.15□□□□□ -0.62
CLN3-201ENST00000333496 TP53TG3Q9ULZ0 132 aa11.15□□□□□ -0.62
CLN3-201ENST00000333496 SNURFLB1AK76 121 aa11.14□□□□□ -0.63
CLN3-201ENST00000333496 GGTLC3B5MD39 225 aa11.14□□□□□ -0.63
CLN3-201ENST00000333496 COA6Q5JTJ3 125 aaKnown RBP11.14□□□□□ -0.63
CLN3-201ENST00000333496 LY96Q9Y6Y9 160 aa11.14□□□□□ -0.63
CLN3-201ENST00000333496 NACAE9PAV3 2078 aa11.14□□□□□ -0.63
CLN3-201ENST00000333496 SCO2A0A1W2PP80 73 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 C9JCJ5 164 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 ATP5G1P05496 136 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 SUMO1P63165 101 aaKnown RBP11.13□□□□□ -0.63
CLN3-201ENST00000333496 DAZ2Q13117 558 aaKnown RBP11.13□□□□□ -0.63
CLN3-201ENST00000333496 PYY3Q5JQD4 70 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 Q6AWC8 147 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 C5orf17Q8NAS9 161 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 TRAV9-1A0A075B6T8 112 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 IGHV1OR15-1A0A075B7D0 117 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 TCRAP04437 139 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 OR10D4PQ8NGN7 298 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 SFRP2Q96HF1 295 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 SGK494Q96LW2 274 aa11.13□□□□□ -0.63
CLN3-201ENST00000333496 GAGE12BA1L429 117 aa11.12□□□□□ -0.63
CLN3-201ENST00000333496 F5H768 121 aa11.12□□□□□ -0.63
CLN3-201ENST00000333496 GAGE7O76087 117 aa11.12□□□□□ -0.63
CLN3-201ENST00000333496 GAGE12FP0CL80 117 aa11.12□□□□□ -0.63
CLN3-201ENST00000333496 GAGE12GP0CL81 117 aa11.12□□□□□ -0.63
CLN3-201ENST00000333496 GAGE12IP0CL82 117 aa11.12□□□□□ -0.63
CLN3-201ENST00000333496 Q6ZTI0 123 aa11.12□□□□□ -0.63
CLN3-201ENST00000333496 KLF12Q9Y4X4 402 aa11.12□□□□□ -0.63
CLN3-201ENST00000333496 MUC21Q5SSG8 566 aa11.11□□□□□ -0.63
CLN3-201ENST00000333496 IBA57Q5T440 356 aaKnown RBP11.11□□□□□ -0.63
CLN3-201ENST00000333496 PACRGQ96M98 296 aaPredicted RBP11.11□□□□□ -0.63
CLN3-201ENST00000333496 DERL1Q9BUN8 251 aa11.11□□□□□ -0.63
CLN3-201ENST00000333496 EPDR1Q9UM22 224 aa11.11□□□□□ -0.63
CLN3-201ENST00000333496 MUC4Q99102 2169 aa11.11□□□□□ -0.63
CLN3-201ENST00000333496 LINC00587B1AMM8 73 aa11.1□□□□□ -0.63
CLN3-201ENST00000333496 IGLV2-11P01706 119 aa11.1□□□□□ -0.63
CLN3-201ENST00000333496 P0DMU3 169 aa11.1□□□□□ -0.63
CLN3-201ENST00000333496 FAM231AP0DMU4 169 aa11.1□□□□□ -0.63
CLN3-201ENST00000333496 FAM231CP0DMU5 169 aa11.1□□□□□ -0.63
CLN3-201ENST00000333496 FABP4P15090 132 aa11.1□□□□□ -0.63
CLN3-201ENST00000333496 TCL1AP56279 114 aa11.1□□□□□ -0.63
CLN3-201ENST00000333496 SERTM2A0A1B0GWG4 89 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 HIST1H2BLQ99880 126 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 DNAH10Q8IVF4 4471 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 TRBV20OR9-2A0A075B6H5 130 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 XKRY2A2RUG3 117 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 SPINK4O60575 86 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 PDZD11Q5EBL8 140 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 POM121L12Q8N7R1 296 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 OR10G8Q8NGN5 311 aa11.09□□□□□ -0.63
CLN3-201ENST00000333496 EPPK1P58107 5090 aaKnown RBP11.09□□□□□ -0.63
CLN3-201ENST00000333496 C15orf53Q8NAA6 179 aa11.08□□□□□ -0.64
CLN3-201ENST00000333496 C18orf15Q96N68 181 aa11.08□□□□□ -0.64
CLN3-201ENST00000333496 C8orf49Q96NF6 230 aa11.08□□□□□ -0.64
CLN3-201ENST00000333496 MDFICQ9P1T7 246 aa11.08□□□□□ -0.64
CLN3-201ENST00000333496 PSG8Q9UQ74 426 aa11.08□□□□□ -0.64
CLN3-201ENST00000333496 TRGV1A0A0A0MS02 117 aa11.07□□□□□ -0.64
CLN3-201ENST00000333496 PEX7O00628 323 aa11.07□□□□□ -0.64
CLN3-201ENST00000333496 ZNF80P51504 273 aaPredicted RBP11.07□□□□□ -0.64
CLN3-201ENST00000333496 TDRG1Q3Y452 100 aa11.07□□□□□ -0.64
CLN3-201ENST00000333496 TMEM75Q8N9X5 138 aa11.07□□□□□ -0.64
CLN3-201ENST00000333496 LINC00479Q96M42 142 aa11.07□□□□□ -0.64
CLN3-201ENST00000333496 ATG101Q9BSB4 218 aa11.07□□□□□ -0.64
CLN3-201ENST00000333496 TRAV21A0A0B4J279 112 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 K7EQM0 130 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 RPL19P84098 196 aaKnown RBP11.06□□□□□ -0.64
CLN3-201ENST00000333496 OR5I1Q13606 314 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 FAM159AQ6UWV7 190 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 TMEM18Q96B42 140 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 IL36BQ9NZH7 164 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 TRAPPC1Q9Y5R8 145 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 TRAV34A0A0B4J273 112 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 ZNF415Q09FC8 603 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 TMEM183BQ1AE95 376 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 PRNTQ86SH4 94 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 OCC1Q8TAD7 63 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 NDFIP1Q9BT67 221 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 MRPL16Q9NX20 251 aaKnown RBP11.06□□□□□ -0.64
CLN3-201ENST00000333496 NAGKQ9UJ70 344 aa11.06□□□□□ -0.64
CLN3-201ENST00000333496 TRGV2A0A075B6R0 118 aa11.05□□□□□ -0.64
CLN3-201ENST00000333496 TRAV26-1A0A087WT03 109 aa11.05□□□□□ -0.64
CLN3-201ENST00000333496 PGPEP1LA6NFU8 196 aa11.05□□□□□ -0.64
CLN3-201ENST00000333496 GNRH2O43555 120 aa11.05□□□□□ -0.64
CLN3-201ENST00000333496 NUDT3O95989 172 aa11.05□□□□□ -0.64
CLN3-201ENST00000333496 GCGP01275 180 aa11.05□□□□□ -0.64
CLN3-201ENST00000333496 GNG4P50150 75 aa11.05□□□□□ -0.64
CLN3-201ENST00000333496 JOSD1Q15040 202 aaPredicted RBP11.05□□□□□ -0.64
CLN3-201ENST00000333496 LGALS9BQ3B8N2 356 aa11.05□□□□□ -0.64
CLN3-201ENST00000333496 DNAH2Q9P225 4427 aa11.04□□□□□ -0.64
CLN3-201ENST00000333496 C11orf21Q9P2W6 132 aa11.04□□□□□ -0.64
CLN3-201ENST00000333496 TRGV11A0A075B6L2 103 aa11.03□□□□□ -0.64
CLN3-201ENST00000333496 A0A0J9YY99 117 aa11.03□□□□□ -0.64
CLN3-201ENST00000333496 TSTD3H0UI37 97 aa11.03□□□□□ -0.64
CLN3-201ENST00000333496 COX19Q49B96 90 aa11.03□□□□□ -0.64
CLN3-201ENST00000333496 CENPWQ5EE01 88 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms