RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 LINC01356Q8N9X3 169 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 OR10J6PQ8NGY7 276 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 C17orf77Q96MU5 243 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 INTS1Q8N201 2190 aaKnown RBP3.1□□□□□ -1.91
SCN1A-214ENST00000637038 CELSR2Q9HCU4 2923 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 A0A1W2PRD5 423 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 A0A1W2PRF3 423 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 A0A1W2PRM7 423 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 OR11H12B2RN74 326 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-214ENST00000637038 K7EMI3 77 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 NPYP01303 97 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 IGLC6P0CF74 106 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 PAPPA-AS1Q5QFB9 102 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 RUSC1-AS1Q66K80 236 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 BCL6BQ8N143 479 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-214ENST00000637038 TMEM86BQ8N661 226 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 OR11H1Q8NG94 326 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 OR11H2Q8NH07 326 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 LINC01560Q8TB33 94 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 C16orf92Q96LL3 132 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 C18orf15Q96N68 181 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 LENEPQ9Y5L5 61 aa3.1□□□□□ -1.91
SCN1A-214ENST00000637038 A0A1W2PPM0 123 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 ODF3BA8MYP8 253 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 LYNX1G3V0Z9 82 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 NCR2O95944 276 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 LYNX1P0DP58 116 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 EGR2P11161 476 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-214ENST00000637038 RPL24P83731 157 aaKnown RBP3.09□□□□□ -1.91
SCN1A-214ENST00000637038 C22orf34Q6ZV56 151 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 LINC00482Q8N8I6 264 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 RAB37Q96AX2 223 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 CHAC1Q9BUX1 264 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 MEGF9Q9H1U4 602 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 HIVEP2P31629 2446 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 OVOL1O14753 267 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 MRPS12O15235 138 aaKnown RBP3.09□□□□□ -1.91
SCN1A-214ENST00000637038 EVI2AP22794 236 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 ARL3P36405 182 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 RPL32P62910 135 aaKnown RBP3.09□□□□□ -1.91
SCN1A-214ENST00000637038 Q6ZVH6 145 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 WFDC11Q8NEX6 87 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 Q8TAT8 98 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 FANCD2OSQ96PS1 177 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 HIST1H4GQ99525 98 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 S4R3C0 116 aa3.09□□□□□ -1.91
SCN1A-214ENST00000637038 ANK3Q12955 4377 aaKnown RBP3.09□□□□□ -1.92
SCN1A-214ENST00000637038 TRAV21A0A0B4J279 112 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 FAM223BA6NKX1 122 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 H7C1H1 209 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 ASIPP42127 132 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 C15orf32Q32M92 178 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 C5orf47Q569G3 176 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 C2orf91Q6ZV80 131 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 FAM223AQ8IWN6 122 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 LINC00477Q96M19 166 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 CNFNQ9BYD5 112 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 SS18L2Q9UHA2 77 aa3.09□□□□□ -1.92
SCN1A-214ENST00000637038 FN1P02751 2386 aaKnown RBP3.09□□□□□ -1.92
SCN1A-214ENST00000637038 TRAV8-6A0A0B4J262 113 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 CRIP1P50238 77 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 UBE2E1P51965 193 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 KLRD1Q13241 179 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 EBI3Q14213 229 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 SMKR1H3BMG3 65 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV3-23P01764 117 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 CTSGP08311 255 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 PRB3Q04118 309 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-214ENST00000637038 HIST2H2BDQ6DRA6 164 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 ZNF502Q8TBZ5 544 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 NRGNQ92686 78 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 SCGB3A1Q96QR1 104 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 VGLL1Q99990 258 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 PHLDA3Q9Y5J5 127 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 B4DSR2 109 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 PRR30Q53SZ7 412 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-214ENST00000637038 ZC2HC1BQ5TFG8 222 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 CLEC19AQ6UXS0 136 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 DTX2Q86UW9 622 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 C20orf78Q9BR46 151 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 ABCA4P78363 2273 aa3.08□□□□□ -1.92
SCN1A-214ENST00000637038 A0A087WX48 190 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 TRAV12-1A0A0B4J245 112 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 FGF6P10767 208 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 DPH3P1Q9H4G8 78 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 NHP2Q9NX24 153 aaKnown RBP3.07□□□□□ -1.92
SCN1A-214ENST00000637038 MOB4Q9Y3A3 225 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 TNCP24821 2201 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 CADP27708 2225 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 LINC01546A6NGU7 62 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 F8W1H4 67 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 MED14OSP0DP75 135 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 PAX8Q06710 450 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 FOXE3Q13461 319 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 KRTAP24-1Q3LI83 254 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 SCGB1D4Q6XE38 83 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 WFDC3Q8IUB2 231 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 CEND1Q8N111 149 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 DYNAPQ8N1N2 210 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms