RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 DIRC3C9JPN6 131 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 SMLR1H3BR10 107 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 RGS13O14921 159 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 ARPC5O15511 151 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 PLA2G1BP04054 148 aaKnown RBP7.43□□□□□ -1.22
VPS4B-202ENST00000588059 NMBP08949 121 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 ARL14EPLP0DKL9 152 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 CRISP2P16562 243 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 SERF2P84101 59 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 WFDC10BQ8IUB3 73 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 ZFAND2AQ8N6M9 145 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 ZNF680Q8NEM1 530 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 NTN5Q8WTR8 489 aaPredicted RBP7.43□□□□□ -1.22
VPS4B-202ENST00000588059 RAB24Q969Q5 203 aa7.43□□□□□ -1.22
VPS4B-202ENST00000588059 K7EP13 123 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 SPINK4O60575 86 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 IGHV3-53P01767 116 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 STAG3L2P0CL84 134 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 STAG3L3P0CL85 134 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 PRR9Q5T870 116 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 GOLT1AQ6ZVE7 132 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 IQCF2Q8IXL9 164 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 EIF4E3Q8N5X7 224 aaKnown RBP7.42□□□□□ -1.22
VPS4B-202ENST00000588059 DEFB104AQ8WTQ1 72 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 ST6GAL2Q96JF0 529 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 ACTR3CQ9C0K3 210 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-202ENST00000588059 PRO0255Q9UI72 69 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 KLF12Q9Y4X4 402 aa7.42□□□□□ -1.22
VPS4B-202ENST00000588059 FAT3Q8TDW7 4589 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 G3V3Q6 166 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 EVI2AP22794 236 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 GCHFRP30047 84 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 CRYBA4P53673 196 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 GNG5P63218 68 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 MRPL23Q16540 153 aaKnown RBP7.41□□□□□ -1.22
VPS4B-202ENST00000588059 Q6ZQT7 251 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 NEGR1Q7Z3B1 354 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 LINC00528Q8N1L1 170 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 C8orf49Q96NF6 230 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 ARPC5LQ9BPX5 153 aa7.41□□□□□ -1.22
VPS4B-202ENST00000588059 IGHV1OR15-1A0A075B7D0 117 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 TRBV7-9A0A0J9YWB2 115 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 CXorf1O96002 111 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 TCL1AP56279 114 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 FHL2Q14192 279 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 ANXA2RQ3ZCQ2 193 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 MUC21Q5SSG8 566 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 AKR1C8PQ5T2L2 129 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 TMEM167BQ9NRX6 74 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 MRPL16Q9NX20 251 aaKnown RBP7.4□□□□□ -1.22
VPS4B-202ENST00000588059 TP53TG3Q9ULZ0 132 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 PLA2G2DQ9UNK4 145 aa7.4□□□□□ -1.22
VPS4B-202ENST00000588059 TRAV8-1A0A0A6YYK1 113 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 TAAR5O14804 337 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 C1QBP02746 253 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 CRYGDP07320 174 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 SLAQ13239 276 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 Q6ZSA8 131 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 C10orf126Q8N4M7 172 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 Q8N814 137 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 SGK494Q96LW2 274 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 NAGKQ9UJ70 344 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 HHLA3Q9XRX5 114 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 LENEPQ9Y5L5 61 aa7.39□□□□□ -1.23
VPS4B-202ENST00000588059 F6UZH7 168 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 K7EQD1 137 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 PSCAO43653 123 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 SRIP30626 198 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 ZNF415Q09FC8 603 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 IBA57Q5T440 356 aaKnown RBP7.38□□□□□ -1.23
VPS4B-202ENST00000588059 FAM159AQ6UWV7 190 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 ARL6IP6Q8N6S5 226 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 C5orf17Q8NAS9 161 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 TMED6Q8WW62 240 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 TREM1Q9NP99 234 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 CYTL1Q9NRR1 136 aa7.38□□□□□ -1.23
VPS4B-202ENST00000588059 CTXND1A0A1B0GTU2 59 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 SERTM2A0A1B0GWG4 89 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 K7EQM0 130 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 TCRAP04437 139 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 FGF8P55075 233 aaPredicted RBP7.37□□□□□ -1.23
VPS4B-202ENST00000588059 SUMO1P63165 101 aaKnown RBP7.37□□□□□ -1.23
VPS4B-202ENST00000588059 ZNF726P1Q15940 193 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 TMEM183BQ1AE95 376 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 Q6AWC8 147 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 TMEM183AQ8IXX5 376 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 SUN5Q8TC36 379 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 NDFIP1Q9BT67 221 aa7.37□□□□□ -1.23
VPS4B-202ENST00000588059 TRAV21A0A0B4J279 112 aa7.36□□□□□ -1.23
VPS4B-202ENST00000588059 GGTLC3B5MD39 225 aa7.36□□□□□ -1.23
VPS4B-202ENST00000588059 KRTAP10-4P60372 401 aaPredicted RBP7.36□□□□□ -1.23
VPS4B-202ENST00000588059 UBE2G2P60604 165 aa7.36□□□□□ -1.23
VPS4B-202ENST00000588059 KCNRGQ8N5I3 272 aa7.36□□□□□ -1.23
VPS4B-202ENST00000588059 OR11H4Q8NGC9 324 aa7.36□□□□□ -1.23
VPS4B-202ENST00000588059 TVP23CQ96ET8 276 aa7.36□□□□□ -1.23
VPS4B-202ENST00000588059 EPDR1Q9UM22 224 aa7.36□□□□□ -1.23
VPS4B-202ENST00000588059 PSG8Q9UQ74 426 aa7.36□□□□□ -1.23
VPS4B-202ENST00000588059 TRGV11A0A075B6L2 103 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 TRGV4A0A0C4DH28 118 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 KANTRA0A1W2PQU2 76 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms