RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 TIMD4Q96H15 378 aa3.71□□□□□ -1.81
CD44-230ENST00000528922 ATP6V0BQ99437 205 aa3.71□□□□□ -1.81
CD44-230ENST00000528922 MRPL20Q9BYC9 149 aaKnown RBP3.71□□□□□ -1.81
CD44-230ENST00000528922 SLC25A39Q9BZJ4 359 aaPredicted RBP3.71□□□□□ -1.81
CD44-230ENST00000528922 Q9H3A6 140 aa3.71□□□□□ -1.81
CD44-230ENST00000528922 SMPXQ9UHP9 88 aa3.71□□□□□ -1.81
CD44-230ENST00000528922 ICE1Q9Y2F5 2266 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 IGHV3-16A0A0C4DH30 117 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 A0A1W2PNU3 283 aaPredicted RBP3.7□□□□□ -1.82
CD44-230ENST00000528922 IGLC7A0M8Q6 106 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 C2orf70A6NJV1 201 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 F2Z2F3 143 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ENSAO43768 121 aaKnown RBP3.7□□□□□ -1.82
CD44-230ENST00000528922 MOSP00540 346 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 GP9P14770 177 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ID1P41134 155 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 GPR6P46095 362 aaPredicted RBP3.7□□□□□ -1.82
CD44-230ENST00000528922 WT1-ASQ06250 92 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 SLAQ13239 276 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 COTL1Q14019 142 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 VAMP3Q15836 100 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 LGALS9BQ3B8N2 356 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 Q56UQ5 140 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 MUC21Q5SSG8 566 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 LGALS9CQ6DKI2 356 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ZNF493Q6ZR52 646 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 TCF24Q7RTU0 167 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 FAM216BQ8N7L0 139 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 CSNK1G2-AS1Q8NCQ2 148 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 PIFOQ8TCI5 191 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 SIGLEC9Q9Y336 463 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 SMAD5-AS1Q9Y6J3 95 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ATMQ13315 3056 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ITPR2Q14571 2701 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 LRBAP50851 2863 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 IGKV1D-37A0A075B6S9 117 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 IGHV2-70DA0A0C4DH43 119 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 J3QR89 54 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 K7EMI3 77 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ZNF207O43670 478 aaKnown RBP3.7□□□□□ -1.82
CD44-230ENST00000528922 TCF21O43680 179 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 GNG7O60262 68 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 SPINK4O60575 86 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 CNIH1O95406 144 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 IGLV2-23P01705 113 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 PYYP10082 97 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 CDKN1BP46527 198 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 UCNP55089 124 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 LYZP61626 148 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ARF6P62330 175 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 CCL8P80075 99 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 RHOGP84095 191 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 PSG3Q16557 428 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 LINC01545Q5VT33 79 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 REG3GQ6UW15 175 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 PATE2Q6UY27 113 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ERASQ7Z444 233 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 MOB3BQ86TA1 216 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 Q86TA4 180 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ZGRF1Q86YA3 2104 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 ORMDL3Q8N138 153 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 DEFB125Q8N687 156 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 Q8N976 141 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 OR10W1Q8NGF6 305 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 OR5A1Q8NGJ0 315 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 RNASE8Q8TDE3 154 aaKnown RBP3.7□□□□□ -1.82
CD44-230ENST00000528922 BLNKQ8WV28 456 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 RNASE6Q93091 150 aaKnown RBP3.7□□□□□ -1.82
CD44-230ENST00000528922 LEAP2Q969E1 77 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 SHANK2-AS3Q9BTD1 123 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 NXT2Q9NPJ8 142 aaKnown RBP3.7□□□□□ -1.82
CD44-230ENST00000528922 RABAC1Q9UI14 185 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 FAM215AQ9Y5M1 114 aa3.7□□□□□ -1.82
CD44-230ENST00000528922 MALRD1Q5VYJ5 2156 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 TRBV19A0A075B6N1 114 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 IGHV1-3A0A0C4DH29 117 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 IGHV1-24A0A0C4DH33 117 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 A0A1B0GVY2 172 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 TMEM189A5PLL7 270 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 RBAKDNA6NC62 111 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 H3BRN7 92 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 BUB1B-PAK6H3BSN5 160 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 M0R1W7 72 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 PPP1R17O96001 155 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 IGLV1-47P01700 117 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 IGHV3-7P01780 117 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 HBDP02042 147 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 CRYGBP07316 175 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 IGLC1P0CG04 106 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 COX8AP10176 69 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 HLA-DRB4P13762 266 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 IGLL1P15814 213 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 HINT1P49773 126 aaPredicted RBP3.69□□□□□ -1.82
CD44-230ENST00000528922 DLX6P56179 175 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 SLC35B1P78383 322 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 HSD52Q0P140 79 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 FAM19A2Q8N3H0 131 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 NPBQ8NG41 125 aa3.69□□□□□ -1.82
CD44-230ENST00000528922 SRSF12Q8WXF0 261 aaKnown RBP3.69□□□□□ -1.82
CD44-230ENST00000528922 CCL17Q92583 94 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms