RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TMEM147Q9BVK8 224 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 GGACTQ9BVM4 153 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 TRAV5A0A0B4J249 113 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 IGHV3-66A0A0C4DH42 116 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 RNF222A6NCQ9 220 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 FAM25EA8MYX2 175 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 F5H768 121 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 WRBO00258 174 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 MPC2O95563 127 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 RLN2P04090 185 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 CNN1P51911 297 aaKnown RBP2.63□□□□□ -1.99
USP54-217ENST00000498213 EMP1P54849 157 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 TAS2R30P59541 319 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 OR2F1Q13607 317 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 LGALSLQ3ZCW2 172 aaPredicted RBP2.63□□□□□ -1.99
USP54-217ENST00000498213 LRRC37A5PQ49AS3 106 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 IBA57Q5T440 356 aaKnown RBP2.63□□□□□ -1.99
USP54-217ENST00000498213 LCN15Q6UWW0 184 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 SSX7Q7RTT5 188 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 IQCF2Q8IXL9 164 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 OR4B1Q8NGF8 309 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 PPP1R1CQ8WVI7 109 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 GPR146Q96CH1 333 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 C2orf50Q96LR7 162 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 LINC00052Q96N35 136 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 C11orf1Q9H5F2 150 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 OR5AC2Q9NZP5 309 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 MBD2Q9UBB5 411 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 LINC00588Q9Y4M8 146 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 HSPB11Q9Y547 144 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 PXMP4Q9Y6I8 212 aa2.63□□□□□ -1.99
USP54-217ENST00000498213 TRAV26-1A0A087WT03 109 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 FXYD6-FXYD2A0A087WZ82 144 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 PLAC8L1A1L4L8 177 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 C5orf51A6NDU8 294 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 SIVA1O15304 175 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 ARPC5O15511 151 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 CRXO43186 299 aaPredicted RBP2.62□□□□□ -1.99
USP54-217ENST00000498213 PITX3O75364 302 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 HYPMO75409 117 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 ORM1P02763 201 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 SEC11BP0C7V7 166 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 DNAH10OSP0CZ25 163 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 MT1HL1P0DM35 61 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 PDE6HQ13956 83 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 IAH1Q2TAA2 248 aaPredicted RBP2.62□□□□□ -1.99
USP54-217ENST00000498213 CST9LP1Q5W188 147 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 PRR27Q6MZM9 219 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 ZNF546Q86UE3 836 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 OR8A1Q8NGG7 326 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 ACY3Q96HD9 319 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 HYLS1Q96M11 299 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 LINC01587Q99440 93 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 SHANK2-AS3Q9BTD1 123 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 NMES1Q9C002 83 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 MRPL36Q9P0J6 103 aaKnown RBP2.62□□□□□ -1.99
USP54-217ENST00000498213 PRO0255Q9UI72 69 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 TNFSF18Q9UNG2 199 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 PRELID1Q9Y255 219 aa2.62□□□□□ -1.99
USP54-217ENST00000498213 RCL1Q9Y2P8 373 aaKnown RBP2.62□□□□□ -1.99
USP54-217ENST00000498213 IGKV1D-37A0A075B6S9 117 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 IGHV3OR16-12A0A075B7B8 117 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 IGSF23A1L1A6 192 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 A8MU10 97 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 H3BRN7 92 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 TSC22D2O75157 780 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 IGHV3-48P01763 117 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 SLC25A5P05141 298 aaKnown RBP2.61□□□□□ -1.99
USP54-217ENST00000498213 DEFB130BP0DP73 79 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 DEFB130AP0DP74 79 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 HTN3P15516 51 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 EVI2AP22794 236 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 LEPP41159 167 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 S100A10P60903 97 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 LYZP61626 148 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 RAB31Q13636 194 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 LAGE3Q14657 143 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 OPCMLQ14982 345 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 MRPL23Q16540 153 aaKnown RBP2.61□□□□□ -1.99
USP54-217ENST00000498213 PSG3Q16557 428 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 GDF5OSQ5U4N7 250 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 Q6ZRN7 208 aaPredicted RBP2.61□□□□□ -1.99
USP54-217ENST00000498213 BPIFA4PQ86YQ2 179 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 ARL6IP6Q8N6S5 226 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 ZNF738Q8NE65 137 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 ASB13Q8WXK3 278 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 C2orf48Q96LS8 159 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 LINC00477Q96M19 166 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 TXNDC17Q9BRA2 123 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 CHCHD5Q9BSY4 110 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 RSG1Q9BU20 258 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 PBDC1Q9BVG4 233 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 SLC25A39Q9BZJ4 359 aaPredicted RBP2.61□□□□□ -1.99
USP54-217ENST00000498213 SLC35B3Q9H1N7 401 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 WFDC1Q9HC57 220 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 NPVFQ9HCQ7 196 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 CYTL1Q9NRR1 136 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 GSKIPQ9P0R6 139 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 HIGD1AQ9Y241 93 aa2.61□□□□□ -1.99
USP54-217ENST00000498213 WDR83OSQ9Y284 106 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms