RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 FUT9Q9Y231 359 aa7.55□□□□□ -1.2
VPS53-207ENST00000570510 TAAR5O14804 337 aa7.54□□□□□ -1.2
VPS53-207ENST00000570510 OXTP01178 125 aa7.54□□□□□ -1.2
VPS53-207ENST00000570510 HIST1H1AQ02539 215 aaPredicted RBP7.54□□□□□ -1.2
VPS53-207ENST00000570510 ACOT6Q3I5F7 207 aaPredicted RBP7.54□□□□□ -1.2
VPS53-207ENST00000570510 C4orf48Q5BLP8 95 aa7.54□□□□□ -1.2
VPS53-207ENST00000570510 PQLC2Q6ZP29 291 aa7.54□□□□□ -1.2
VPS53-207ENST00000570510 NTN5Q8WTR8 489 aaPredicted RBP7.54□□□□□ -1.2
VPS53-207ENST00000570510 RPUSD4Q96CM3 377 aaKnown RBP7.54□□□□□ -1.2
VPS53-207ENST00000570510 LINC00477Q96M19 166 aa7.54□□□□□ -1.2
VPS53-207ENST00000570510 AAMDCQ9H7C9 122 aa7.54□□□□□ -1.2
VPS53-207ENST00000570510 LY96Q9Y6Y9 160 aa7.54□□□□□ -1.2
VPS53-207ENST00000570510 HMCN2Q8NDA2 5059 aa7.54□□□□□ -1.2
VPS53-207ENST00000570510 TRGV2A0A075B6R0 118 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 A0A096LPF7 62 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 H7BYZ3 331 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 SLC25A5P05141 298 aaKnown RBP7.53□□□□□ -1.2
VPS53-207ENST00000570510 NBEAP1P0C6P0 100 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 EVI2AP22794 236 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 CDKN1BP46527 198 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 KHDC3LQ587J8 217 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 RNASE8Q8TDE3 154 aaKnown RBP7.53□□□□□ -1.2
VPS53-207ENST00000570510 FAM167A-AS1Q96KT0 104 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 OR51M1Q9H341 326 aa7.53□□□□□ -1.2
VPS53-207ENST00000570510 BORCS7-ASMTA0A0B4J1R7 106 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 RBAKDNA6NC62 111 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 H3BQ15 152 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 MORN5Q5VZ52 161 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 IGFL4Q6B9Z1 124 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 RNF182Q8N6D2 247 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 OR2T35Q8NGX2 323 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 TMPRSS5Q9H3S3 457 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 TNFSF18Q9UNG2 199 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 LENEPQ9Y5L5 61 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 ICOSQ9Y6W8 199 aa7.52□□□□□ -1.21
VPS53-207ENST00000570510 FFAR4Q5NUL3 377 aa7.51□□□□□ -1.21
VPS53-207ENST00000570510 FAM74A1Q5RGS3 127 aa7.51□□□□□ -1.21
VPS53-207ENST00000570510 TMED6Q8WW62 240 aa7.51□□□□□ -1.21
VPS53-207ENST00000570510 PAXXQ9BUH6 204 aa7.51□□□□□ -1.21
VPS53-207ENST00000570510 SLC25A2Q9BXI2 301 aa7.51□□□□□ -1.21
VPS53-207ENST00000570510 SERTM2A0A1B0GWG4 89 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 A0A1W2PPV4 95 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 HMSDA8MTL9 139 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 K7EP13 123 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 PAX4O43316 350 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 NDUFB4O95168 129 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 LEPP41159 167 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 CSN1S1P47710 185 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 ZNF345Q14585 488 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 C9orf47Q6ZRZ4 202 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 LINC00467Q9BRT7 94 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 FAM30AQ9NZY2 134 aa7.5□□□□□ -1.21
VPS53-207ENST00000570510 TRAV5A0A0B4J249 113 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 FBLL1A6NHQ2 334 aaKnown RBP7.49□□□□□ -1.21
VPS53-207ENST00000570510 SLC17A3O00476 420 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 C1QBP02746 253 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 CRISP2P16562 243 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 MIR17HGQ75NE6 70 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 LINC00612Q8N6U2 182 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 SUN5Q8TC36 379 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 FXYD5Q96DB9 178 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 VSIG2Q96IQ7 327 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 WFDC1Q9HC57 220 aa7.49□□□□□ -1.21
VPS53-207ENST00000570510 RNF222A6NCQ9 220 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 OR7C2O60412 319 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 EIF5AP63241 154 aaKnown RBP7.48□□□□□ -1.21
VPS53-207ENST00000570510 GCSAMLQ5JQS6 135 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 C10orf126Q8N4M7 172 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 OR10G4Q8NGN3 311 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 OR10G9Q8NGN4 311 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 OR10G7Q8NGN6 311 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 FAM19A4Q96LR4 140 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 PYGO2Q9BRQ0 406 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 SMIM3Q9BZL3 60 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 NKX6-2Q9C056 277 aaPredicted RBP7.48□□□□□ -1.21
VPS53-207ENST00000570510 TMEM167BQ9NRX6 74 aa7.48□□□□□ -1.21
VPS53-207ENST00000570510 FXYD6-FXYD2A0A087WZ82 144 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 A0A0D9SG52 128 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 KLLNB2CW77 178 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 CRYGDP07320 174 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 STAG3L2P0CL84 134 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 STAG3L3P0CL85 134 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 PYYP10082 97 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 ATP6V0CP27449 155 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 UBE2L3P68036 154 aaKnown RBP7.47□□□□□ -1.21
VPS53-207ENST00000570510 MRPL23Q16540 153 aaKnown RBP7.47□□□□□ -1.21
VPS53-207ENST00000570510 TMEM78Q5T7P6 136 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 LYPD5Q6UWN5 251 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 Q6ZTI0 123 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 NEGR1Q7Z3B1 354 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 ACTR3CQ9C0K3 210 aaPredicted RBP7.47□□□□□ -1.21
VPS53-207ENST00000570510 OTORQ9NRC9 128 aa7.47□□□□□ -1.21
VPS53-207ENST00000570510 TRGV1A0A0A0MS02 117 aa7.46□□□□□ -1.22
VPS53-207ENST00000570510 CXorf1O96002 111 aa7.46□□□□□ -1.22
VPS53-207ENST00000570510 CDC34P49427 236 aaPredicted RBP7.46□□□□□ -1.22
VPS53-207ENST00000570510 Q5BKY6 102 aa7.46□□□□□ -1.22
VPS53-207ENST00000570510 Q8N814 137 aa7.46□□□□□ -1.22
VPS53-207ENST00000570510 TCEAL7Q9BRU2 100 aa7.46□□□□□ -1.22
VPS53-207ENST00000570510 UMAD1C9J7I0 102 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 G3V3Q6 166 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms