RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 ATP5G2Q06055 141 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 FAM104BQ5XKR9 115 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 TEX22C9J3V5 150 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 K7EIM0 57 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 HAX1O00165 279 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 GNLYP22749 145 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 ADAMTSL5Q6ZMM2 481 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 MAP1LC3AQ9H492 121 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 TSSC4Q9Y5U2 329 aaPredicted RBP11.47□□□□□ -0.57
HOXC11-202ENST00000546378 FLNCQ14315 2725 aa11.46□□□□□ -0.57
HOXC11-202ENST00000546378 IGHV3-11P01762 117 aa11.46□□□□□ -0.57
HOXC11-202ENST00000546378 MRPL35Q9NZE8 188 aaKnown RBP11.46□□□□□ -0.57
HOXC11-202ENST00000546378 UTP20O75691 2785 aaKnown RBP11.46□□□□□ -0.58
HOXC11-202ENST00000546378 C9orf118A6NHY6 69 aa11.46□□□□□ -0.58
HOXC11-202ENST00000546378 TMEM155Q4W5P6 130 aa11.46□□□□□ -0.58
HOXC11-202ENST00000546378 C21orf62Q9NYP8 219 aa11.46□□□□□ -0.58
HOXC11-202ENST00000546378 HRNRQ86YZ3 2850 aaPredicted RBP11.46□□□□□ -0.58
HOXC11-202ENST00000546378 ZANQ9Y493 2812 aa11.46□□□□□ -0.58
HOXC11-202ENST00000546378 USP24Q9UPU5 2620 aa11.46□□□□□ -0.58
HOXC11-202ENST00000546378 TEX36Q5VZQ5 186 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 DYNAPQ8N1N2 210 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 PIP4P2Q8N4L2 257 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 GATA4P43694 442 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 INSL3P51460 131 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 ADORA2A-AS1P86434 159 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 SHANK2-AS3Q9BTD1 123 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 CHAC1Q9BUX1 264 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 KLF12Q9Y4X4 402 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 FN1P02751 2386 aaKnown RBP11.45□□□□□ -0.58
HOXC11-202ENST00000546378 IGF1P05019 195 aa11.45□□□□□ -0.58
HOXC11-202ENST00000546378 NPIPB6E9PJ23 425 aa11.44□□□□□ -0.58
HOXC11-202ENST00000546378 PRB1P04280 392 aa11.44□□□□□ -0.58
HOXC11-202ENST00000546378 SAMD13Q5VXD3 122 aa11.44□□□□□ -0.58
HOXC11-202ENST00000546378 CLEC2AQ6UVW9 174 aa11.44□□□□□ -0.58
HOXC11-202ENST00000546378 F5H697 171 aa11.44□□□□□ -0.58
HOXC11-202ENST00000546378 I3L2K1 104 aa11.44□□□□□ -0.58
HOXC11-202ENST00000546378 TNFRSF6BO95407 300 aa11.44□□□□□ -0.58
HOXC11-202ENST00000546378 PAX2Q02962 417 aa11.44□□□□□ -0.58
HOXC11-202ENST00000546378 SRSF9Q13242 221 aaKnown RBP eCLIP11.44□□□□□ -0.58
HOXC11-202ENST00000546378 A0A1W2PPM0 123 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 MS4A6AQ9H2W1 248 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 A0A1B0GWB2 263 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 MFAP4P55083 255 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 MRGPRG-AS1Q2M3A8 158 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 FAM74A4Q5TZK3 123 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 F6UB75 175 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 NBR2O15453 112 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 AZU1P20160 251 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 CD300EQ496F6 205 aaPredicted RBP11.43□□□□□ -0.58
HOXC11-202ENST00000546378 LINC00477Q96M19 166 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 PRR25Q96S07 402 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 PRORYQ9H606 182 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 ZNF492Q9P255 531 aa11.43□□□□□ -0.58
HOXC11-202ENST00000546378 LINC01548A6NM66 108 aa11.42□□□□□ -0.58
HOXC11-202ENST00000546378 C15orf32Q32M92 178 aa11.42□□□□□ -0.58
HOXC11-202ENST00000546378 CELSR2Q9HCU4 2923 aa11.42□□□□□ -0.58
HOXC11-202ENST00000546378 K7EP34 96 aa11.42□□□□□ -0.58
HOXC11-202ENST00000546378 RPL7P18124 248 aaKnown RBP11.42□□□□□ -0.58
HOXC11-202ENST00000546378 HSD52Q0P140 79 aa11.42□□□□□ -0.58
HOXC11-202ENST00000546378 MAPKAPK5-AS1Q8N8E1 139 aa11.42□□□□□ -0.58
HOXC11-202ENST00000546378 CFHR4Q92496 578 aa11.42□□□□□ -0.58
HOXC11-202ENST00000546378 PTH2Q96A98 100 aa11.42□□□□□ -0.58
HOXC11-202ENST00000546378 BEX4Q9NWD9 120 aaPredicted RBP11.42□□□□□ -0.58
HOXC11-202ENST00000546378 SMIM17P0DL12 118 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 SEC11AP67812 179 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 LY6EQ16553 131 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 MYOZ3Q8TDC0 251 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 IGKCP01834 107 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 C14orf178Q8N769 122 aaPredicted RBP11.41□□□□□ -0.58
HOXC11-202ENST00000546378 SMIM12Q96EX1 92 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 MTORP42345 2549 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 ANXA2RQ3ZCQ2 193 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 KLHL30-AS1Q8NEE0 82 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 ZNF479Q96JC4 524 aa11.41□□□□□ -0.58
HOXC11-202ENST00000546378 TRBV25-1A0A075B6N4 114 aa11.4□□□□□ -0.58
HOXC11-202ENST00000546378 ZNF672Q499Z4 452 aaPredicted RBP11.4□□□□□ -0.58
HOXC11-202ENST00000546378 DTX2Q86UW9 622 aa11.4□□□□□ -0.58
HOXC11-202ENST00000546378 SHISA9B4DS77 424 aa11.4□□□□□ -0.58
HOXC11-202ENST00000546378 CRXO43186 299 aaPredicted RBP11.4□□□□□ -0.58
HOXC11-202ENST00000546378 SOX21Q9Y651 276 aaPredicted RBP11.4□□□□□ -0.58
HOXC11-202ENST00000546378 C1orf122Q6ZSJ8 110 aa11.4□□□□□ -0.59
HOXC11-202ENST00000546378 DPM3Q9P2X0 92 aa11.4□□□□□ -0.59
HOXC11-202ENST00000546378 FGF6P10767 208 aa11.39□□□□□ -0.59
HOXC11-202ENST00000546378 PSMB2P49721 201 aa11.39□□□□□ -0.59
HOXC11-202ENST00000546378 NPFFR1Q9GZQ6 430 aa11.39□□□□□ -0.59
HOXC11-202ENST00000546378 H3BRN7 92 aa11.39□□□□□ -0.59
HOXC11-202ENST00000546378 APOBEC3AP31941 199 aaPredicted RBP11.39□□□□□ -0.59
HOXC11-202ENST00000546378 SCGB1C2P0DMR2 95 aa11.38□□□□□ -0.59
HOXC11-202ENST00000546378 ATP5IP56385 69 aaPredicted RBP11.38□□□□□ -0.59
HOXC11-202ENST00000546378 C16orf92Q96LL3 132 aa11.38□□□□□ -0.59
HOXC11-202ENST00000546378 MRPL16Q9NX20 251 aaKnown RBP11.38□□□□□ -0.59
HOXC11-202ENST00000546378 H3BRM9 83 aa11.38□□□□□ -0.59
HOXC11-202ENST00000546378 RPL39LQ96EH5 51 aaKnown RBP11.38□□□□□ -0.59
HOXC11-202ENST00000546378 GFRA4Q9GZZ7 299 aa11.38□□□□□ -0.59
HOXC11-202ENST00000546378 CRYGCP07315 174 aa11.38□□□□□ -0.59
HOXC11-202ENST00000546378 NUP37Q8NFH4 326 aa11.38□□□□□ -0.59
HOXC11-202ENST00000546378 HLA-DRB4P13762 266 aa11.37□□□□□ -0.59
HOXC11-202ENST00000546378 NPC2P61916 151 aa11.37□□□□□ -0.59
HOXC11-202ENST00000546378 TMEM78Q5T7P6 136 aa11.37□□□□□ -0.59
HOXC11-202ENST00000546378 BOD1L2Q8IYS8 172 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms