RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SMIM2Q9BVW6 85 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 F8W1H4 67 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 RNF138Q8WVD3 245 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 FGF23Q9GZV9 251 aaPredicted RBP13.04□□□□□ -0.32
COL7A1-210ENST00000487017 ZNF407Q9C0G0 2248 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 RNF223E7ERA6 249 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 SPTBN1Q01082 2364 aaKnown RBP13.04□□□□□ -0.32
COL7A1-210ENST00000487017 LYPD6Q86Y78 171 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 ZNF491Q8N8L2 437 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 K7EP13 123 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 CDPF1Q6NVV7 123 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 KLF2Q9Y5W3 355 aaPredicted RBP13.03□□□□□ -0.32
COL7A1-210ENST00000487017 PYGO2Q9BRQ0 406 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 ROS1P08922 2347 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 CEND1Q8N111 149 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 NCOR1O75376 2440 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 H3BMM0 161 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 UBE2WQ96B02 151 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 A0A1W2PPM0 123 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 F8VRH5 84 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 ZNF561-AS1K7EIQ3 104 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 SIVA1O15304 175 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 TAL2Q16559 108 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 COA6Q5JTJ3 125 aaKnown RBP13.03□□□□□ -0.32
COL7A1-210ENST00000487017 TSSC4Q9Y5U2 329 aaPredicted RBP13.03□□□□□ -0.32
COL7A1-210ENST00000487017 POLEQ07864 2286 aa13.03□□□□□ -0.32
COL7A1-210ENST00000487017 TCF15Q12870 199 aa13.02□□□□□ -0.32
COL7A1-210ENST00000487017 PLA2G2EQ9NZK7 142 aa13.02□□□□□ -0.32
COL7A1-210ENST00000487017 IGLC7A0M8Q6 106 aa13.02□□□□□ -0.32
COL7A1-210ENST00000487017 NDUFS7O75251 213 aa13.02□□□□□ -0.33
COL7A1-210ENST00000487017 TMEM126AQ9H061 195 aa13.02□□□□□ -0.33
COL7A1-210ENST00000487017 KIAA1671Q9BY89 1806 aa13.02□□□□□ -0.33
COL7A1-210ENST00000487017 PLA2G2CQ5R387 149 aa13.01□□□□□ -0.33
COL7A1-210ENST00000487017 PPDPFLQ8WWR9 84 aa13.01□□□□□ -0.33
COL7A1-210ENST00000487017 RNF114Q9Y508 228 aa13.01□□□□□ -0.33
COL7A1-210ENST00000487017 IGHV3-38A0A0C4DH36 116 aa13.01□□□□□ -0.33
COL7A1-210ENST00000487017 LINC01619G3V211 115 aa13.01□□□□□ -0.33
COL7A1-210ENST00000487017 CDKN1BP46527 198 aa13.01□□□□□ -0.33
COL7A1-210ENST00000487017 UNQ6494/PRO21346Q6UXR6 183 aa13.01□□□□□ -0.33
COL7A1-210ENST00000487017 C17orf77Q96MU5 243 aa13.01□□□□□ -0.33
COL7A1-210ENST00000487017 NXPH4O95158 308 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 C20orf78Q9BR46 151 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 KIR2DL5BA0A0G2JN68 375 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 KIR2DL5BA0A0G2JPC4 375 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 C9orf153Q5TBE3 101 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 KIR2DL5AQ8N109 375 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 ETDBQ3ZM63 59 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 DKK2Q9UBU2 259 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 DAD1P61803 113 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 ZNF747Q9BV97 191 aa13□□□□□ -0.33
COL7A1-210ENST00000487017 TRAV12-2A0A075B6T6 113 aa12.99□□□□□ -0.33
COL7A1-210ENST00000487017 FAM120AOSQ5T036 256 aa12.99□□□□□ -0.33
COL7A1-210ENST00000487017 RBMY1FQ15415 496 aaKnown RBP12.99□□□□□ -0.33
COL7A1-210ENST00000487017 PLXNB3Q9ULL4 1909 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 NOTCH4Q99466 2003 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 NUP210Q8TEM1 1887 aaPredicted RBP12.98□□□□□ -0.33
COL7A1-210ENST00000487017 SPTBN2O15020 2390 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 TRAV25A0A0B4J276 109 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 DENND4CQ5VZ89 1909 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 GAGE7O76087 117 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 GAGE12FP0CL80 117 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 GAGE12GP0CL81 117 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 GAGE12IP0CL82 117 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 NKAPP1Q8N9T2 125 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 TRBV25-1A0A075B6N4 114 aa12.98□□□□□ -0.33
COL7A1-210ENST00000487017 DIDO1Q9BTC0 2240 aaKnown RBP12.97□□□□□ -0.33
COL7A1-210ENST00000487017 FGF6P10767 208 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 PKDREJQ9NTG1 2253 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 MORN5Q5VZ52 161 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 Q71RC1 249 aaPredicted RBP12.97□□□□□ -0.33
COL7A1-210ENST00000487017 CTSZQ9UBR2 303 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 PRO1854Q9UHT4 67 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 NDUFA12Q9UI09 145 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 IGHV7-4-1A0A0J9YVY3 117 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 K7ERJ3 54 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 AZU1P20160 251 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 GAGE6Q13070 117 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 SOCS3O14543 225 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 CGB3P0DN86 165 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 EGR2P11161 476 aaPredicted RBP12.97□□□□□ -0.33
COL7A1-210ENST00000487017 ATP6V0BQ99437 205 aa12.97□□□□□ -0.33
COL7A1-210ENST00000487017 A0A096LPF7 62 aa12.96□□□□□ -0.33
COL7A1-210ENST00000487017 LHBP01229 141 aa12.96□□□□□ -0.33
COL7A1-210ENST00000487017 INAFM2P0DMQ5 153 aa12.96□□□□□ -0.33
COL7A1-210ENST00000487017 DYNAPQ8N1N2 210 aa12.96□□□□□ -0.33
COL7A1-210ENST00000487017 ACACAQ13085 2346 aa12.96□□□□□ -0.33
COL7A1-210ENST00000487017 HLA-DMBP28068 263 aa12.96□□□□□ -0.34
COL7A1-210ENST00000487017 SRSF2Q01130 221 aaKnown RBP12.96□□□□□ -0.34
COL7A1-210ENST00000487017 ABCA1O95477 2261 aa12.96□□□□□ -0.34
COL7A1-210ENST00000487017 TCTEX1D4Q5JR98 221 aa12.96□□□□□ -0.34
COL7A1-210ENST00000487017 SP5Q6BEB4 398 aaPredicted RBP12.95□□□□□ -0.34
COL7A1-210ENST00000487017 DOCK10Q96BY6 2186 aa12.95□□□□□ -0.34
COL7A1-210ENST00000487017 RBAKDNA6NC62 111 aa12.95□□□□□ -0.34
COL7A1-210ENST00000487017 ZNRF2Q8NHG8 242 aa12.95□□□□□ -0.34
COL7A1-210ENST00000487017 CADP27708 2225 aa12.95□□□□□ -0.34
COL7A1-210ENST00000487017 J3QQQ9 107 aa12.95□□□□□ -0.34
COL7A1-210ENST00000487017 DOCK9Q9BZ29 2069 aa12.95□□□□□ -0.34
COL7A1-210ENST00000487017 C22orf46C9J442 243 aa12.94□□□□□ -0.34
COL7A1-210ENST00000487017 HOXD3P31249 432 aaPredicted RBP12.94□□□□□ -0.34
COL7A1-210ENST00000487017 HAMPP81172 84 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms