RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 DUX3Q96PT4 197 aa4.08□□□□□ -1.76
VPS41-211ENST00000466017 ODF3Q96PU9 254 aa4.08□□□□□ -1.76
VPS41-211ENST00000466017 GPR61Q9BZJ8 451 aa4.08□□□□□ -1.76
VPS41-211ENST00000466017 OSTCQ9NRP0 149 aa4.08□□□□□ -1.76
VPS41-211ENST00000466017 ZNF492Q9P255 531 aa4.08□□□□□ -1.76
VPS41-211ENST00000466017 PSG8Q9UQ74 426 aa4.08□□□□□ -1.76
VPS41-211ENST00000466017 ZNF256Q9Y2P7 627 aaPredicted RBP4.08□□□□□ -1.76
VPS41-211ENST00000466017 C7orf77A4D0Y5 90 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 OR4C46A6NHA9 309 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 H3BTX0 84 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 DNASE2O00115 360 aaPredicted RBP4.07□□□□□ -1.76
VPS41-211ENST00000466017 DUSP14O95147 198 aaKnown RBP4.07□□□□□ -1.76
VPS41-211ENST00000466017 MT-ND4LP03901 98 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 SNRPCP09234 159 aaKnown RBP4.07□□□□□ -1.76
VPS41-211ENST00000466017 CRISP2P16562 243 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 GNG4P50150 75 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 UBE2G1P62253 170 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 GUCA2BQ16661 112 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 FOXI2Q6ZQN5 318 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 GOLT1AQ6ZVE7 132 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 TMEM61Q8N0U2 210 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 OR8A1Q8NGG7 326 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 ISOC2Q96AB3 205 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 FAM19A4Q96LR4 140 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 LINC00479Q96M42 142 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 IMMP2LQ96T52 175 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 DERL1Q9BUN8 251 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 AGPAT4-IT1Q9H0P7 198 aa4.07□□□□□ -1.76
VPS41-211ENST00000466017 C19orf71A6NCJ1 209 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 FAM231BA6NCW3 169 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 ZNF705FA8MVS1 300 aaPredicted RBP4.06□□□□□ -1.76
VPS41-211ENST00000466017 PRAC2D3DTV9 90 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 HLA-DMBP28068 263 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 ZNF138P52744 262 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 FOXA3P55318 350 aaPredicted RBP4.06□□□□□ -1.76
VPS41-211ENST00000466017 GNG5P63218 68 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 ZNF674Q2M3X9 581 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 CENPWQ5EE01 88 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 TMEM78Q5T7P6 136 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 EBLN2Q6P2I7 272 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 C3orf56Q8N813 242 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 ZNF738Q8NE65 137 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 OR10J6PQ8NGY7 276 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 ASCL2Q99929 193 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 NDFIP1Q9BT67 221 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 SAV1Q9H4B6 383 aaPredicted RBP4.06□□□□□ -1.76
VPS41-211ENST00000466017 ZMAT5Q9UDW3 170 aaKnown RBP4.06□□□□□ -1.76
VPS41-211ENST00000466017 CUBNO60494 3623 aa4.06□□□□□ -1.76
VPS41-211ENST00000466017 TRAV9-1A0A075B6T8 112 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 TRAV34A0A0B4J273 112 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 A0A0J9YX75 114 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 FABP5P3A8MUU1 101 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 K7EN84 100 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 M0R036 132 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 SAP30O75446 220 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 PFN1P07737 140 aaKnown RBP4.05□□□□□ -1.76
VPS41-211ENST00000466017 CXCL1P09341 107 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 CT45A10P0DMU9 189 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 CRIP1P50238 77 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 CEBPGP53567 150 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 HIST1H1AQ02539 215 aaPredicted RBP4.05□□□□□ -1.76
VPS41-211ENST00000466017 KRTAP21-3Q3LHN1 58 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 SMUG1Q53HV7 270 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 ATRAIDQ6UW56 229 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 PRNTQ86SH4 94 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 Q86TA4 180 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 GBGT1Q8N5D6 347 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 FAM24BQ8N5W8 94 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 RNF182Q8N6D2 247 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 OR4B1Q8NGF8 309 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 OR10G8Q8NGN5 311 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 SFRP2Q96HF1 295 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 BTF3L4Q96K17 158 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 VGLL1Q99990 258 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 PYGO2Q9BRQ0 406 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 SMCO4Q9NRQ5 59 aa4.05□□□□□ -1.76
VPS41-211ENST00000466017 IGKV3-7A0A075B6H7 116 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 TRAV8-1A0A0A6YYK1 113 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 A8MWL6 223 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 KLLNB2CW77 178 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 H3BMM0 161 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 AMBPP02760 352 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 ZNF688P0C7X2 276 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 HLA-DRB4P13762 266 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 TSPOP30536 169 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 DEFB131AP59861 70 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 RPS20P60866 119 aaKnown RBP4.04□□□□□ -1.76
VPS41-211ENST00000466017 SUMO2P61956 95 aaKnown RBP4.04□□□□□ -1.76
VPS41-211ENST00000466017 ADIRFQ15847 76 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 RNF212Q495C1 297 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 PSMG4Q5JS54 123 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 DNLZQ5SXM8 178 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 IBA57Q5T440 356 aaKnown RBP4.04□□□□□ -1.76
VPS41-211ENST00000466017 Q6AWC8 147 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 HIST2H2BDQ6DRA6 164 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 ZFAND2AQ8N6M9 145 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 C15orf54Q8N8G6 183 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 RPL36ALQ969Q0 106 aaKnown RBP4.04□□□□□ -1.76
VPS41-211ENST00000466017 C20orf144Q9BQM9 153 aa4.04□□□□□ -1.76
VPS41-211ENST00000466017 GFRA4Q9GZZ7 299 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms