RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 TIMM8BQ9Y5J9 83 aaPredicted RBP7.71□□□□□ -1.18
UBR4-208ENST00000459947 NDUFS6O75380 124 aaKnown RBP7.71□□□□□ -1.18
UBR4-208ENST00000459947 UBE2G1P62253 170 aa7.71□□□□□ -1.18
UBR4-208ENST00000459947 ZNF415Q09FC8 603 aa7.71□□□□□ -1.18
UBR4-208ENST00000459947 SMUG1Q53HV7 270 aa7.71□□□□□ -1.18
UBR4-208ENST00000459947 TREM1Q9NP99 234 aa7.71□□□□□ -1.18
UBR4-208ENST00000459947 IGHV1OR15-1A0A075B7D0 117 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 TRAV12-2A0A075B6T6 113 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 GGTLC3B5MD39 225 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 RNASE4P34096 147 aaKnown RBP7.7□□□□□ -1.18
UBR4-208ENST00000459947 CST9LP1Q5W188 147 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 SSX7Q7RTT5 188 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 SPXQ9BT56 116 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 TRAV12-3A0A0B4J271 114 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 FGF8P55075 233 aaPredicted RBP7.7□□□□□ -1.18
UBR4-208ENST00000459947 DAD1P61803 113 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 CASC10Q5T4H9 136 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 DKK2Q9UBU2 259 aa7.7□□□□□ -1.18
UBR4-208ENST00000459947 FAM159AQ6UWV7 190 aa7.69□□□□□ -1.18
UBR4-208ENST00000459947 PHLDA1Q8WV24 401 aaPredicted RBP7.69□□□□□ -1.18
UBR4-208ENST00000459947 TP53TG3Q9ULZ0 132 aa7.69□□□□□ -1.18
UBR4-208ENST00000459947 YTHDF2Q9Y5A9 579 aaKnown RBP7.69□□□□□ -1.18
UBR4-208ENST00000459947 ZNF705GA8MUZ8 300 aaPredicted RBP7.69□□□□□ -1.18
UBR4-208ENST00000459947 UBE2G2P60604 165 aa7.69□□□□□ -1.18
UBR4-208ENST00000459947 C2CD4CQ8TF44 421 aa7.69□□□□□ -1.18
UBR4-208ENST00000459947 DAZ2Q13117 558 aaKnown RBP7.69□□□□□ -1.18
UBR4-208ENST00000459947 NDUFAF3Q9BU61 184 aa7.69□□□□□ -1.18
UBR4-208ENST00000459947 BIN3Q9NQY0 253 aa7.69□□□□□ -1.18
UBR4-208ENST00000459947 CBY3A6NI87 242 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 SDF2L1Q9HCN8 221 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 PDE6DO43924 150 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 PAGE4O60829 102 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 GNG5P63218 68 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 TDRG1Q3Y452 100 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 RNASE8Q8TDE3 154 aaKnown RBP7.68□□□□□ -1.18
UBR4-208ENST00000459947 KLF12Q9Y4X4 402 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 ZNF324O75467 553 aaPredicted RBP7.68□□□□□ -1.18
UBR4-208ENST00000459947 BTN1A1Q13410 526 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 TMEM183BQ1AE95 376 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 FAM222AQ5U5X8 452 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 TMPRSS5Q9H3S3 457 aa7.68□□□□□ -1.18
UBR4-208ENST00000459947 LGALS9BQ3B8N2 356 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 COX8CQ7Z4L0 72 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 Q86TA4 180 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 Q8TAT8 98 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 SMIM12Q96EX1 92 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 TCL1AP56279 114 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 EIF3GO75821 320 aaKnown RBP eCLIP7.67□□□□□ -1.18
UBR4-208ENST00000459947 AKR1D1P51857 326 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 NANOS2P60321 138 aaKnown RBP7.67□□□□□ -1.18
UBR4-208ENST00000459947 C21orf62-AS1Q17RA5 79 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 ZFAND6Q6FIF0 208 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 PRNTQ86SH4 94 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 C11orf52Q96A22 123 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 C18orf15Q96N68 181 aa7.67□□□□□ -1.18
UBR4-208ENST00000459947 DNAH9Q9NYC9 4486 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 CIDEAO60543 219 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 ATP5G1P05496 136 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 ATP5G3P48201 142 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 PLA2G2EQ9NZK7 142 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 J3KRW8 73 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 CD300CQ08708 224 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 C12orf74Q32Q52 190 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 LINC00612Q8N6U2 182 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 VAX2Q9UIW0 290 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 PFN1P07737 140 aaKnown RBP7.66□□□□□ -1.18
UBR4-208ENST00000459947 EMP1P54849 157 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 GNG13Q9P2W3 67 aa7.66□□□□□ -1.18
UBR4-208ENST00000459947 FABP5P3A8MUU1 101 aa7.65□□□□□ -1.18
UBR4-208ENST00000459947 BCL2P10415 239 aa7.65□□□□□ -1.18
UBR4-208ENST00000459947 SLAQ13239 276 aa7.65□□□□□ -1.18
UBR4-208ENST00000459947 SLC7A5P1Q8MH63 180 aa7.65□□□□□ -1.18
UBR4-208ENST00000459947 C15orf53Q8NAA6 179 aa7.65□□□□□ -1.18
UBR4-208ENST00000459947 PRKDCP78527 4128 aaKnown RBP7.65□□□□□ -1.18
UBR4-208ENST00000459947 DEFB131BA0A096LNP1 70 aa7.65□□□□□ -1.18
UBR4-208ENST00000459947 DEFB4AO15263 64 aa7.65□□□□□ -1.18
UBR4-208ENST00000459947 PTH2Q96A98 100 aa7.65□□□□□ -1.18
UBR4-208ENST00000459947 GCGP01275 180 aa7.64□□□□□ -1.19
UBR4-208ENST00000459947 CXCL1P09341 107 aa7.64□□□□□ -1.19
UBR4-208ENST00000459947 IGLV2-11P01706 119 aa7.64□□□□□ -1.19
UBR4-208ENST00000459947 HTN1P15515 57 aa7.64□□□□□ -1.19
UBR4-208ENST00000459947 MEF2BQ02080 365 aaPredicted RBP7.64□□□□□ -1.19
UBR4-208ENST00000459947 PIK3CD-AS1Q5SR53 167 aa7.64□□□□□ -1.19
UBR4-208ENST00000459947 TMEM183AQ8IXX5 376 aa7.64□□□□□ -1.19
UBR4-208ENST00000459947 LTAP01374 205 aa7.64□□□□□ -1.19
UBR4-208ENST00000459947 NKX2-5P52952 324 aaPredicted RBP7.64□□□□□ -1.19
UBR4-208ENST00000459947 CELA1Q9UNI1 258 aa7.64□□□□□ -1.19
UBR4-208ENST00000459947 FAM162BQ5T6X4 162 aa7.63□□□□□ -1.19
UBR4-208ENST00000459947 TRAV8-1A0A0A6YYK1 113 aa7.63□□□□□ -1.19
UBR4-208ENST00000459947 PRR9Q5T870 116 aa7.63□□□□□ -1.19
UBR4-208ENST00000459947 ALKAL2Q6UX46 152 aa7.63□□□□□ -1.19
UBR4-208ENST00000459947 Q6ZTC4 211 aa7.63□□□□□ -1.19
UBR4-208ENST00000459947 PLAC8L1A1L4L8 177 aa7.63□□□□□ -1.19
UBR4-208ENST00000459947 SPINK4O60575 86 aa7.63□□□□□ -1.19
UBR4-208ENST00000459947 C11orf72Q8NBR9 251 aa7.63□□□□□ -1.19
UBR4-208ENST00000459947 NOP10Q9NPE3 64 aaKnown RBP7.63□□□□□ -1.19
UBR4-208ENST00000459947 TMEM250H0YL14 139 aa7.62□□□□□ -1.19
UBR4-208ENST00000459947 AZU1P20160 251 aa7.62□□□□□ -1.19
UBR4-208ENST00000459947 KIR3DS1Q14943 382 aa7.62□□□□□ -1.19
UBR4-208ENST00000459947 DNLZQ5SXM8 178 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms