RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TRBV6-6A0A0A6YYG2 114 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 C1orf43Q9BWL3 253 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 BPESC1Q9GZL8 116 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 HLA-DMBP28068 263 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 TMEM14BQ9NUH8 114 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 IGKV1-16P04430 117 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 TLN1Q9Y490 2541 aaKnown RBP10.07□□□□□ -0.8
VPS13A-204ENST00000376634 CDKN1BP46527 198 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 CSRP3P50461 194 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 ARMS2P0C7Q2 107 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 UBE2BP63146 152 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 CARD19Q96LW7 228 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 NDUFS6O75380 124 aaKnown RBP10.07□□□□□ -0.8
VPS13A-204ENST00000376634 CEND1Q8N111 149 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 F8P00451 2351 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 K7EP34 96 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 CFHR4Q92496 578 aa10.07□□□□□ -0.8
VPS13A-204ENST00000376634 IGKV1-12A0A0C4DH73 117 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 IGKV1D-12P01611 117 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 IGHG2P01859 326 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 RNASE2P10153 161 aaKnown RBP10.06□□□□□ -0.8
VPS13A-204ENST00000376634 ZNF134P52741 427 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 C15orf62A8K5M9 175 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 ANGP03950 147 aaKnown RBP10.06□□□□□ -0.8
VPS13A-204ENST00000376634 HS3ST6Q96QI5 342 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 A8MWP6 167 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 GFI1Q99684 422 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 MSMBP08118 114 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 HERVK_113P63121 156 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 TAL2Q16559 108 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 ZNF664Q8N3J9 261 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 PAX9P55771 341 aa10.06□□□□□ -0.8
VPS13A-204ENST00000376634 LHFPL1Q86WI0 220 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 Q6P435 159 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 CLPSL2Q6UWE3 100 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 C8orf86Q6ZUL3 223 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 PRO1854Q9UHT4 67 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 IGKV1D-17A0A075B6S4 117 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 GAGE12HA6NDE8 117 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 PYY3Q5JQD4 70 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 Q8N8P6 123 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 TEX48A0A1B0GUV7 120 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 RNF223E7ERA6 249 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 K7EP13 123 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 HGFACQ04756 655 aa10.05□□□□□ -0.8
VPS13A-204ENST00000376634 MCRIP2Q9BUT9 160 aaKnown RBP10.05□□□□□ -0.8
VPS13A-204ENST00000376634 A0A1W2PPM0 123 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 IGHV1-24A0A0C4DH33 117 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 NDUFA12Q9UI09 145 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 HLA-DRB4P13762 266 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 HLA-DRB4X5D2U9 266 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 SDHAF1A6NFY7 115 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 C2orf66Q6UXQ4 117 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 IGF2BP2-AS1Q96M15 143 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 ATP6V0E1O15342 81 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 IGHV1OR15-1A0A075B7D0 117 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 RUSC1-AS1Q66K80 236 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 SVIPQ8NHG7 77 aa10.04□□□□□ -0.8
VPS13A-204ENST00000376634 EFNA2O43921 213 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 BOD1L2Q8IYS8 172 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 ZNF492Q9P255 531 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 KNCNA6PVL3 124 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 GAGE7O76087 117 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 GAGE12FP0CL80 117 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 GAGE12GP0CL81 117 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 GAGE12IP0CL82 117 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 FUSP35637 526 aaKnown RBP eCLIP10.03□□□□□ -0.8
VPS13A-204ENST00000376634 UBE2E1P51965 193 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 BAALCQ8WXS3 180 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 TINCRA0A1B0GVN0 87 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 MBD3L4A6NDZ8 208 aaPredicted RBP10.03□□□□□ -0.8
VPS13A-204ENST00000376634 MBD3L3A6NE82 208 aaPredicted RBP10.03□□□□□ -0.8
VPS13A-204ENST00000376634 MBD3L5A6NJ08 208 aaPredicted RBP10.03□□□□□ -0.8
VPS13A-204ENST00000376634 NXPH4O95158 308 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 GAS1P54826 345 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 MBD3L2Q8NHZ7 208 aaPredicted RBP10.03□□□□□ -0.8
VPS13A-204ENST00000376634 PNRC2Q9NPJ4 139 aaKnown RBP10.03□□□□□ -0.8
VPS13A-204ENST00000376634 SMIM2Q9BVW6 85 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 POLR3KQ9Y2Y1 108 aaPredicted RBP10.03□□□□□ -0.8
VPS13A-204ENST00000376634 NTN3O00634 580 aaPredicted RBP10.03□□□□□ -0.8
VPS13A-204ENST00000376634 FLVCR1-AS1Q8TAF5 88 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 THSD7BQ9C0I4 1608 aa10.03□□□□□ -0.8
VPS13A-204ENST00000376634 UNQ6494/PRO21346Q6UXR6 183 aa10.02□□□□□ -0.8
VPS13A-204ENST00000376634 ORMDL1Q9P0S3 153 aa10.02□□□□□ -0.8
VPS13A-204ENST00000376634 LY6HO94772 140 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 PRB1P04280 392 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 C20orf144Q9BQM9 153 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 ANKRD17O75179 2603 aaKnown RBP10.02□□□□□ -0.81
VPS13A-204ENST00000376634 PIEZO1Q92508 2521 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 TRAV26-2A0A0B4J265 109 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 TMEM213A2RRL7 107 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 Q0VG73 95 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 FAM104BQ5XKR9 115 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 WFDC9Q8NEX5 89 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 MST1LQ2TV78 715 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 LINC00479Q96M42 142 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 RPL18AQ02543 176 aaKnown RBP10.02□□□□□ -0.81
VPS13A-204ENST00000376634 ETDBQ3ZM63 59 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 Q6ZS49 121 aa10.02□□□□□ -0.81
VPS13A-204ENST00000376634 ABCA12Q86UK0 2595 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms